Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2542 ATGGAACTGTGTACTCGAAACTTCACAAGTTTCCTTCTTTTGAAGCCTTCTTCCTCTTCAAACTCAAACTCTGTTGTTCTTCTTCGTGCTAACGCCAACGCTACAACGCCCTTCAAATTCAATTCCCTTAAACTCTCATCTTTTTCGCCTCACACTTCCTCTCCCTTCACACTCTCTGCTTCTTCTTCTTCTTCTTCTTCAGTTGCAGTTGGCACAGAACAGGACCGCCTTCCAGCAGAATTGAAGGTCACTGAAACAGAGGCACCCAATTCCAGAGTTAAATTGCATGTGGAGGTGCCCTCATTGGTATGTGAGGATTGTTACAAAAGGGTCATAGCAGAGTTTATGAAGCAAGCAAAGGTCCCTGGATTTCGCCCTGGAAAGAATGTTCCAGAAAGCATTCTTATTGGTTATGTTGGGATTCAGAATGTTCAAAAGGCTACTATTGAATCTATATTGAGGAGGACACTTTCACATGCTATGACATCGGTTACTGGAAGGGCGTTGCAGGACTCAGTACGAATAGTGACCAAGTTTTCTGAGATGGAGGATACATATTCTTCTCTTGGCTCTCTTAGATATGATGTCCTTGTTGATATTGCTCCAGAAATCAAATGGATTCCCGATAATAATGCATACAAAAATTTAAAGATTGTTGTTGAGATAGATAGTGATATAGATGCTCACAGAGCATCTGAACAAGAATTTAGAAGGCGTTACAAGTCCATTGGTGCACTGAAAGTGGTTACTGACAGAGGGTTACAGGTTGGTGATATTGTTGTCCTTGACATCTCAGCAACAACCGTTGATCAAGATGAATCAAATGTTAAAAGTATTCCTTCTGCTGAAAGCAAAGGCTTTAATTTTGATACAGAAGATGGTGACAAAGTATTACCGGGTTTCCTTGATTCTATAATTGGAATTCAACAAGGTGAATCAAAGTCTTTTCATCTTGTATTTCCTGAAACATGGAGGCAAGAAGATCTTCGTGGTATTCATGCTCAGTTTACTGTTGAGTGCAAAGAACTTTTTTACAGAGATTTACCAGAGCTGGATGATTCTATTGCTGATAAGCTTCTCCCTGGATGTACCACGGTGGAGCAGGTCAAAGACTTGTTGTTACAGAGATTCCTGGAGGTGGAGCAAACAGCTAGAGAACAAGCAACTGATAATGCTATCTTAGATCAGATTGCTAAGATGGTAGAAGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCCAACCTATTAGAAATACAGGCAAAAATGAAACTAAATGAGCAGCAGCTGGCGACTCTGTCAAGTCCGAAGGCTGTGAACCAATATCTTGAGCATCAGAAGGAAAATATAACAAATTTGATAAAACAGAATCTGGCAGTTGGTGATATATTTAGGCGTGAAAATCTGCAGTTTGCTACTGAGGACCTCCTCAAAGAGGTTGAGAATTCCATTTCTGAATTCAAACGTCAAAAACAAGAATACGATGAGGAACGGGTGAAGGAACAGGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACACGCAGAGATTCAGTATATAACTAGATGA 1602 0.4039 MELCTRNFTSFLLLKPSSSSNSNSVVLLRANANATTPFKFNSLKLSSFSPHTSSPFTLSASSSSSSSVAVGTEQDRLPAELKVTETEAPNSRVKLHVEVPSLVCEDCYKRVIAEFMKQAKVPGFRPGKNVPESILIGYVGIQNVQKATIESILRRTLSHAMTSVTGRALQDSVRIVTKFSEMEDTYSSLGSLRYDVLVDIAPEIKWIPDNNAYKNLKIVVEIDSDIDAHRASEQEFRRRYKSIGALKVVTDRGLQVGDIVVLDISATTVDQDESNVKSIPSAESKGFNFDTEDGDKVLPGFLDSIIGIQQGESKSFHLVFPETWRQEDLRGIHAQFTVECKELFYRDLPELDDSIADKLLPGCTTVEQVKDLLLQRFLEVEQTAREQATDNAILDQIAKMVEVDIPQSLFEEQGRQLYGANLLEIQAKMKLNEQQLATLSSPKAVNQYLEHQKENITNLIKQNLAVGDIFRRENLQFATEDLLKEVENSISEFKRQKQEYDEERVKEQVQEILEGAKVLEWLREHAEIQYITR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2542 533 Coils Coil 483 510 - -
Aed3g2542 533 Pfam Bacterial trigger factor protein (TF) C-terminus 365 522 IPR008880 GO:0006457|GO:0015031
Aed3g2542 533 SUPERFAMILY Trigger factor ribosome-binding domain 81 208 IPR036611 GO:0006457|GO:0015031
Aed3g2542 533 Pfam Bacterial trigger factor protein (TF) 82 221 IPR008881 GO:0006457|GO:0015031
Aed3g2542 533 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 65 532 IPR005215 GO:0015031
Aed3g2542 533 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 351 529 IPR027304 -
Aed3g2542 533 Gene3D - 213 528 IPR037041 GO:0006457|GO:0015031
Aed3g2542 533 Gene3D - 242 349 IPR046357 GO:0003755
Aed3g2542 533 Hamap Trigger factor [tig]. 81 529 IPR005215 GO:0015031
Aed3g2542 533 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 65 532 - -
Aed3g2542 533 SUPERFAMILY FKBP-like 247 352 - -
Aed3g2542 533 Gene3D - 79 204 IPR036611 GO:0006457|GO:0015031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2542 K03545 - gmx:100812597 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2542 3 27680300 27685316 Aed3g2542 3 27680300 27685316 ECH