Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2538 ATGTCCCGTGTAAAAAAGAGTGTTTTTGGTGTTCTCATTTCTTTGTTTCTGTTCTGCTCTTCTTCAGCGATGTTCGTTCATAGGATTTTGTCCCGTGTCTCCATCACCATTTGCCGAAACTCGCTTATCTCTGCTTCGCAAACACCCCAACACTTGTCCACCTTCTCCAATAACTTACATTCCCTTCTTCCCCATTCACCCAACAAGCCGATTCCTGTTCAACTCAATTTGTTGCTGCCACCATTAAATTCATTATCAGCTCCAGGATTTGGGTTTTCTTCATCAGCTTCAACTGAAAATAATGACAAGGAAAAAGGAAATAATGTGCATAATGGAGATTCTACAAATGATGACCCTGCAAAAACAAATGAAGAGGCGAAGAATAATGATCAGGCTAGACAAGATAAACCTGCATATAAAATAGAGGAATCAGGTTCTATTTCAGATACTCAATCTCCAACTGTCAAAAGAAGGAGGAGAGGTTTTAAACGAACTGCATTTTCTGATTCTGATTCAGAGAGTGAATGCGACCTATCCAGGGATGATTTAATTAAACTTGTGGCTGAAAAGGAGGAACTTGTGAAGTTAAAGCACAAGGAAATTGAAAAAATGCAGGATAAAGTTTTGCGTACTTATGCAGAGATGGAGAATGTCATGGAAAGGACTAGACGTGAAGCAGATAATTCAAAAAAATTTGCTATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGAAAAGTTTTCAAAAATTGATAGTGACTCTGCTGAAGCGGTAAAACTCCTGAAAACACTTCTGCAAGGTGTCGAAATGACAGAGAAACAATTATCAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACAAACGAGCCCTTTGATCCACACAGGCATAATGCCATCTTCCAAATCCCTGATGGTTCTAAGCCTCCAGGAACTGTTGCAGCTGTTCTGAAGGCAGGATATATGCTTTATGATCGTGTTATTCGGCCAGCGGAAGTTGGTGTAACCCACGCAATCGGCGATGAAGAGAATGATGGAAAAGATAGTGTAGCTGATAAGGACTCATAG 1110 0.3964 MSRVKKSVFGVLISLFLFCSSSAMFVHRILSRVSITICRNSLISASQTPQHLSTFSNNLHSLLPHSPNKPIPVQLNLLLPPLNSLSAPGFGFSSSASTENNDKEKGNNVHNGDSTNDDPAKTNEEAKNNDQARQDKPAYKIEESGSISDTQSPTVKRRRRGFKRTAFSDSDSESECDLSRDDLIKLVAEKEELVKLKHKEIEKMQDKVLRTYAEMENVMERTRREADNSKKFAIQNFAKSLLDVADNLGRASSVVKEKFSKIDSDSAEAVKLLKTLLQGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTHAIGDEENDGKDSVADKDS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2538 369 Hamap Protein GrpE [grpE]. 117 351 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed3g2538 369 ProSitePatterns grpE protein signature. 306 349 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed3g2538 369 PANTHER GRPE PROTEIN HOMOLOG 24 130 - -
Aed3g2538 369 Coils Coil 187 225 - -
Aed3g2538 369 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 189 295 IPR013805 -
Aed3g2538 369 PANTHER GRPE PROTEIN 161 351 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed3g2538 369 PRINTS GrpE protein signature 303 318 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed3g2538 369 PRINTS GrpE protein signature 330 349 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed3g2538 369 PRINTS GrpE protein signature 209 225 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed3g2538 369 PANTHER GRPE PROTEIN HOMOLOG 161 351 - -
Aed3g2538 369 Pfam GrpE 188 350 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed3g2538 369 MobiDBLite consensus disorder prediction 103 142 - -
Aed3g2538 369 MobiDBLite consensus disorder prediction 93 175 - -
Aed3g2538 369 CDD GrpE 202 349 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed3g2538 369 Gene3D - 181 294 IPR013805 -
Aed3g2538 369 Gene3D Head domain of nucleotide exchange factor GrpE 295 350 IPR009012 GO:0006457
Aed3g2538 369 PANTHER GRPE PROTEIN 24 130 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed3g2538 369 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 296 350 IPR009012 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2538 Aed-Chr3 27665462 27668635 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2538 K03687 - gmx:100803396 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2538 3 27665462 27668635 Aed3g2538 3 27665462 27668635 ECH