Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2536 ATGGAGTTCGATCCGATCCCAATTGGTTCGTGCTCCAAAGAACACCAGTCAGCCTATAAGGAGTGGTTCAATTATGCTGATTCAGATAGCGATGGTCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAAATTGTCTCGCGAAGATCTTAAGCAGGTGTGGGCTATTACAGATTCAAAGCGTCAAGGATACCTTGGTTTCACTGAATTTATCATTGCCATGCAGCTAGTTTCTTTGGCTCAATCTGGGCACTCAATAACACCCGATCTGCTGACTAGTAATGTTGATTTTACAAATCTGAAACCTCCCACAATGGAGGGTTTGGACATATTATTAGTTGTGCCTCTTTCTTCTGTGACATCAATAGTTGACGGCTTGAAGAGACTCTACATTCAGAAGCTGAAGCCATTAGAAGTTACTTATCGTTTTAATGATTTTGTATTCCCGTTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGAGCACATATTGGACCTGAGCCAACCACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGATGAGAGAAGTGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAAATGCCTCATCCTCTACTGGAACACATCACATTTGTTGACACTCCTGGGGTTCTATCTGGAGAAAAGCAACGTACACAACGAGCGTATGATTTTACAGGTGTAACATCTTGGTTTGCTGCTAAGTGTGATTTGATACTCCTTCTGTTTGATCCTCACAAACTTGACATTAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGTGTGTATATTGGTTCCTTCAATGACAAGCCTGTAAATGATGCTGCCATTGGTCCAATTGGTAAGGAACTCTTTGAAAAGGAACAGGATGATCTTCTCTCGGATCTAAAAGATGTACCAAAAACAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGAGCCCGGGCAGCCAAAATACATGCTTACATTATCAGTCATCTTAAAAAGGAGATGCCTGCTATGATTGGCAAAGCTAAAGCTCAACAAAAGCTCGTTGATAATTTAGCAGCTGAATTTGGAAAGGTACAAAGGGAGTTCCATTTACCTCCTGGTGATTTCCCAAATGTAGAGTATTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAAATGATACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAACCTCTTGAAGAACTTTAGAAATCCCTATGATTAA 1488 0.4086 MEFDPIPIGSCSKEHQSAYKEWFNYADSDSDGRITGSDATKFFAMSKLSREDLKQVWAITDSKRQGYLGFTEFIIAMQLVSLAQSGHSITPDLLTSNVDFTNLKPPTMEGLDILLVVPLSSVTSIVDGLKRLYIQKLKPLEVTYRFNDFVFPLLTNSDFDAKPMVMLLGQYSTGAHIGPEPTTDRFVVVMSGSDERSVPGNTVAVQADMPFSGLTTFGTAFLSKFVCSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDKPVNDAAIGPIGKELFEKEQDDLLSDLKDVPKTACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKAKAQQKLVDNLAAEFGKVQREFHLPPGDFPNVEYFRERLSGYNIDKFEKLKPKMIQAVDDMLAYDIPNLLKNFRNPYD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2536 495 Gene3D - 10 109 - -
Aed3g2536 495 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 144 380 IPR030381 GO:0005525
Aed3g2536 495 PANTHER EH DOMAIN 117 493 - -
Aed3g2536 495 PANTHER EH DOMAIN 18 115 - -
Aed3g2536 495 Gene3D - 165 378 IPR027417 -
Aed3g2536 495 ProSiteProfiles EH domain profile. 15 98 IPR000261 GO:0005515
Aed3g2536 495 SMART eh_3 8 99 IPR000261 GO:0005515
Aed3g2536 495 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Aed3g2536 495 Gene3D - 129 486 - -
Aed3g2536 495 Pfam Cytoskeletal-regulatory complex EF hand 19 80 IPR000261 GO:0005515
Aed3g2536 495 CDD EH 19 85 IPR000261 GO:0005515
Aed3g2536 495 PANTHER OS02G0158100 PROTEIN 117 493 - -
Aed3g2536 495 PANTHER OS02G0158100 PROTEIN 18 115 - -
Aed3g2536 495 CDD EHD 164 393 - -
Aed3g2536 495 Pfam N-terminal EH-domain containing protein 128 160 IPR031692 -
Aed3g2536 495 SUPERFAMILY EF-hand 12 94 IPR011992 -
Aed3g2536 495 Pfam Domain of unknown function (DUF5600) 385 486 IPR040990 -
Aed3g2536 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 417 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2536 Aed-Chr3 27657319 27663702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2536 1 495 EF-hand Containing Proteins AT3G20290 76.697 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2536 K12483 - gmx:100804468 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2536 3 27657319 27663702 Aed3g2536 3 27657319 27663702 ECH