Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2001 ATGGCGTCGTTCCAGAAGATCAACGTCGCCAACCCCATCGTCGAGATGGACGGAGATGAAATGACTCGGGTTATCTGGAAGATGATCAAGGATAAGCTCATTTTGCCCTTCTTGGAGTTGGACATCAAGTATTATGACTTGGGCCTTCCTTACCGTGATGAGACCGATGATAAAGTTACAGTTGAAAGTGCAGAAGCAACTCTCAAGTACAATGTAGCAATCAAGTGTGCAACTATTACTCCAGATGAAGCTCGTGTGAAGGAGTTTGGCCTGAAGTCAATGTGGAGGAGTCCAAATGGGACAATTAGGAACATTTTGAATGGAACCGTCTTCAGAGAACCAATTCTTTGCAAAAACATTCCTCGCCTTGTTCCTGGTTGGACAAAGGCAATATGTATTGGAAGACATGCATTTGGTGACCAATATCGGGCTACTGACACAGTAATTAAAGGAGCTGGAAAGCTGAAGCTGGTGTTTGTTCCAGAAGGCCAGGGTGAGGAGACTGAATTCGAGGTTTATAACTTCACTGGTGAAGGAGGTGTTTCATTGGCTATGTACAATACTGATGAGTCTATTCGTTCTTTTGCTGAGGCTTCTATGGCAACTGCTTTAGAGAAAAAGTGGCCACTTTATCTTAGCACCAAAAATACAATTCTTAAGAAATATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTATGAGGCAAGCTGGAAATCAAAGTATGAGGCTGCTGGTATATGGTATGAGCATCGTCTCATTGATGATATGGTGGCATATGCACTTAAGAGCGAGGGAGGTTATGTATGGGCATGCAAAAACTATGATGGCGATGTCCAGAGTGATTTCTTAGCTCAAGAAGCAGCCCATGGCACAGTTACCCGTCATTTTAGGGTTCACCAGAAGGGAGGTGAAACCAGCACAAATAGCATAGCATCCATCTTTGCCTGGACAAGAGGGCTAGCCCACAGGGCAAAGCTTGATGACAATGCTAAACTCTTGGATTTCACTGAAAAGCTAGAGGCAGCTTGCATTGGAGTAGTAGAGGGTGGAAAGATGACCAAGGATTTGGCACTTATTCTTCATGGATCCAAGCTTTCAAGGGAGCATTATTTGAACACTGAGGAATTCATCGATGCTGTCGCTTCCATCGTTGTTGACTACGAGTTCTCCTTGCGCGGCCTTCAAAAGAACTCCGACCAGTACCGTCAATCGATTTCTCAGGCTCATCTACGCTCTGCCAAGAGGTTTCTCAAGCTATGCGAAGCCAACAAAGGGTTTTATGTGAAGGCTGGACAGTTTGTTTCGGCGCAGAAAGTGCTGCCGAGAGAGTACTCGTCCACCTTGTCTTCATTACAGGATCAGGTTGCTCCTCTTCCTTTTAAAGTCATTAGGAAAGTGTTAAAGGATAATCTCGGACCTGATTTCTCTGAGATGTTTTTGTCAATTGATGAACAACCTATAGCTGCTGCATCTATTGCTCAAGTTCATCGTGCAGTGCTGAAAAGTGGTCATGAAGTAGCAATCAAGTTATACCCTCAATTCAGGCTTGAGTGGTTACCATTAGCGTTTTCCAACTCTATGTCTTCAGAACTTGATTTTGTTCAGGAGGCAAGGAATTCGGAGAGAGCAGCCAAAAATTTCAGAAATAGTAAAATGGTCAGAATTCCTCATGTATTCTGGGACTTGACAACTAGACTAGTCCTAACCATGCAGTTTTATACGGGACACAAGGTAGCAAAATCATTGACTGAGCTGTTTGCTGAAATGATATTTGTACATGGTTACATACATGGTGATCCACACCCTGGTAATATATTAGTTTCTCCTGAAGGTTGTAATGGTTTCTCTTTGGTTCTTCTAGATCACGCAGTCTACACGGAATTGGATGAAGAATTTAGAAAAGATTTCTGTCAGTTATGGGAAGCTTTGATTCTCAAAGATTCAATGAAAACAATGCGGCTTGGTGAGCGATTTGGTGCTGGGAAGTATTCCAGATACTTACCCATCATTTTCACTGGAACAACCATTGAAAGCAAATATGCTGTTGGAATATCAATTGAAGAAAAAGAGACCTTAAAACAGGAATTGAAATCTCTGTTGTTTGAAGACTTATCTTCATTCATGGAGTCTCTGCCCCCAGCTTTTATTGCTATAATGCGTGTAGAGATCAATCAATCGATCGAATTGCCGGTGATCTTTCGTGATGGTTCTGTCGAAAACCGCATCGCAGACAGACGTCTCAGTCCATTCCACCTTCGCGTCTCGCTATGTCCGCACCGTCCTTCCCAGGTTCAAGATGGCGGAGCAATCGATCCCGAAGGAAGCGGCGTATCAGATCATAAACGACGAGCTGATGCTAGACGGCAATCCGAGGCTGAATCTGGCGTCGTTTGTGACGACGTGGATGGAGCCTGA 2418 0.4363 MASFQKINVANPIVEMDGDEMTRVIWKMIKDKLILPFLELDIKYYDLGLPYRDETDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVYNFTGEGGVSLAMYNTDESIRSFAEASMATALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEGGKMTKDLALILHGSKLSREHYLNTEEFIDAVASIVVDYEFSLRGLQKNSDQYRQSISQAHLRSAKRFLKLCEANKGFYVKAGQFVSAQKVLPREYSSTLSSLQDQVAPLPFKVIRKVLKDNLGPDFSEMFLSIDEQPIAAASIAQVHRAVLKSGHEVAIKLYPQFRLEWLPLAFSNSMSSELDFVQEARNSERAAKNFRNSKMVRIPHVFWDLTTRLVLTMQFYTGHKVAKSLTELFAEMIFVHGYIHGDPHPGNILVSPEGCNGFSLVLLDHAVYTELDEEFRKDFCQLWEALILKDSMKTMRLGERFGAGKYSRYLPIIFTGTTIESKYAVGISIEEKETLKQELKSLLFEDLSSFMESLPPAFIAIMRVEINQSIELPVIFRDGSVENRIADRRLSPFHLRVSLCPHRPSQVQDGGAIDPEGSGVSDHKRRADARRQSEAESGVVCDDVDGA 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2001 805 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 287 383 - -
Aed3g2001 805 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 4 384 - -
Aed3g2001 805 Gene3D Isopropylmalate Dehydrogenase 4 287 - -
Aed3g2001 805 Gene3D Isopropylmalate Dehydrogenase 288 388 - -
Aed3g2001 805 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 5 286 IPR004790 GO:0004450|GO:0006102
Aed3g2001 805 Pfam Isocitrate/isopropylmalate dehydrogenase 8 286 IPR024084 -
Aed3g2001 805 SMART Iso_dh_2 12 381 IPR024084 -
Aed3g2001 805 MobiDBLite consensus disorder prediction 760 805 - -
Aed3g2001 805 Pfam ABC1 atypical kinase-like domain 511 652 IPR004147 -
Aed3g2001 805 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 286 IPR004790 GO:0004450|GO:0006102
Aed3g2001 805 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 287 383 IPR004790 GO:0004450|GO:0006102
Aed3g2001 805 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 286 - -
Aed3g2001 805 SUPERFAMILY Protein kinase-like (PK-like) 453 650 IPR011009 -
Aed3g2001 805 MobiDBLite consensus disorder prediction 776 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2001 Aed-Chr3 24078929 24096193 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2001 K00031 - gmx:100791166 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2001 3 24078929 24096193 Aed3g2001 3 24078929 24096193 ECH