Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1979 ATGGAACAGTTCAAGCCAAGCGCTGCCAACTCTTCACCTCTCACTCCACTTGGCTTCTTGGACAGAGCAGCCACCGTCTACGGCGACGTCCCTTCCGTCGTTTACAACGACACCACCTTCACGTGGTCACAGACGCGCCGCCGATGCCTCCAGCTCGCCTCCGCCCTCTCCTCCATCGGCATCCGCCGCGGCAGCGTGGTCTCCGTTCTGGCCCCCAACATCCCCGCCATGTACGAGCTCCACTTTGCTGTCCCCTTCGCCGGCGCCGTCCTCAACAACATCAACACCCGCCTCGACGCCCGCACGGTCTCCGTCATCCTCCGCCACGCCAACTCCACACTCGTCTTCGTCGATTGCGCCTCACGCGACGTCGTCCTAGAGGCGCTATCACTCTTCCCTAAAGATCATCAAAGTCAACGCCCAACTCTAATTCTCATCACAGACGAGACCGTGGAGAAAGCCTCTCCCACTGTTGATTTCATCGACACATACGAGGAGTTCGTGAGCAAGGGCGATCCGAGCTTCAAGTGGGTCCTACCTAACTCCGAGTGGGACCCGATGATACTTAACTACACTTCAGGAACGACGTCGTCTCCGAAAGGCGTTGTACACAGCCACCGTGGAACGTTCATTGTCGCACTAGACACTCTTATAGACTGGGGTGTTCCCAAGAACCCGATTTATCTCTGGACGCTTCCGATGTTCCACGCTAACGGGTGGAGCCTCCCGTGGGGGATCGCTGCTGTGGGCGGCACTAATATTTGTGTCCGAAAGTTCGATGCGGTTGTCGTTTACTCTCTCATAAAGCGCCATCACGTGACTCACATGTGCGGCGCGCCGGTGGTGCTCAACATGCTGACTAACTCCCCTGACAATAAACCGTTGGAGAAACCGGTTCACATCCTCACCGCCGGAGCGCCGCCTCCCGCGGCGGTGCTCTTCCGGACGGAGGCGCTGGGGTTCGTGGTGAGCCACGGGTACGGTTTGACGGAGACCGGGGGGCTGGTGGTGTCGTGCGCATGGAAGGGGAAGTGGAACCGTCTCCCGGCGGCGGAGAGGGCGCGGCTGAAGGCACGGCAGGGGGTGAGGACGGTGGGGATGGCGGAGATGGACGTGGTGAGTCCCACCACTGGAGAGAGCGTGAAGCGCGACGGAATCAGCATCGGGGAGGTCGTGATGAAAGGAGGGTGCGTCATGTTGGGTTACCTTAAAGACCCCGAAGGAACCGCGAGTTGTCTAAAAAACGGTTGGTTCTACACTGGAGACGTTGGCGTCATGCATGAAGACGGGTACTTGGAAATCAAAGACAGGTCAAAGGATGTTATAATCAGCGGCGGCGAGAATCTGAGCAGCGTGGAGGTGGAGTCGATACTGTACGGACACCCGGCGGTGAACGAGGCGGCGGTGGTGGCGAGGCCGCATGAGTATTGGGGAGAGACGCCGTGTGCGTTTGTGAGCTTGAAGGAAGGATTAAAAGAGAAACCAAGTGAGAATGACATAATACAGTATTGTAGGGAGAACATGCCACATTACATGGTTCCGAAAACAGTAGTTTTCAAAGACGAGCTTCCTAAGACATCTACGGGTAAGATCCAGAAGTTTGTGCTGAGACAAATTGCCAAGGACATGGGTGGATCCTTCACGCAAAGTCGAATGTGA 1659 0.5702 MEQFKPSAANSSPLTPLGFLDRAATVYGDVPSVVYNDTTFTWSQTRRRCLQLASALSSIGIRRGSVVSVLAPNIPAMYELHFAVPFAGAVLNNINTRLDARTVSVILRHANSTLVFVDCASRDVVLEALSLFPKDHQSQRPTLILITDETVEKASPTVDFIDTYEEFVSKGDPSFKWVLPNSEWDPMILNYTSGTTSSPKGVVHSHRGTFIVALDTLIDWGVPKNPIYLWTLPMFHANGWSLPWGIAAVGGTNICVRKFDAVVVYSLIKRHHVTHMCGAPVVLNMLTNSPDNKPLEKPVHILTAGAPPPAAVLFRTEALGFVVSHGYGLTETGGLVVSCAWKGKWNRLPAAERARLKARQGVRTVGMAEMDVVSPTTGESVKRDGISIGEVVMKGGCVMLGYLKDPEGTASCLKNGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESILYGHPAVNEAAVVARPHEYWGETPCAFVSLKEGLKEKPSENDIIQYCRENMPHYMVPKTVVFKDELPKTSTGKIQKFVLRQIAKDMGGSFTQSRM 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1979 552 CDD ttLC_FACS_AEE21_like 12 537 - -
Aed3g1979 552 Pfam AMP-binding enzyme C-terminal domain 453 530 IPR025110 -
Aed3g1979 552 SUPERFAMILY Acetyl-CoA synthetase-like 11 542 - -
Aed3g1979 552 PANTHER ACYL-ACTIVATING ENZYME 2 546 - -
Aed3g1979 552 Pfam AMP-binding enzyme 21 444 IPR000873 -
Aed3g1979 552 Gene3D - 440 551 IPR045851 -
Aed3g1979 552 Gene3D - 2 439 IPR042099 -
Aed3g1979 552 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Aed3g1979 552 PANTHER LONG-CHAIN ACYL-COA SYNTHETASE 2 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1979 Aed-Chr3 23933886 23935544 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1979 1 543 EF-hand Containing Proteins AT1G21540 62.162 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1979 - - gmx:100779857 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1979 3 23933886 23935544 Aed3g1979 3 23933886 23935544 ECH