Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1977 ATGAATGGCCTAACCCCAAACCCTGCAAACTCTCCACCCCTAACTCCACTCACCTTCTTGGAAAGAGCCGCAATCGTCTACGGCGACTCCCACTCCATCATCTACAACCGCACTTCCTTCACTTGGTCCCAAACTCACCGTAGATGCCTTCAACTTGCTTCCTCCCTCACTTCCATCATCGGTGTAGGACGTGGCCATGTCATCTCTGTTCTCTCTCCCAACACTCCCACAATGTACGAACTCCACTTCGCTGTTCCCATGTGTGGGGCCATTCTTAATAACCTAAACCTCCGCCTAGACTCTCACAGTCTCTCCGTACTCCTGCGTCACAGCGAATCAAAACTCGTCTTCGTCCATTCGGAATCTCTCTCACTCATCCTCCAAGCCCTCTCCAAGTTTCCCAAAACCACCCCACACCCTTCCATCATCCTTATCACTGACGATGCTGATTCACATGCACATGCACATGCAAATGCATACGCAACACTCTCTCCTCCAGTCATAGACACACACGAGGGCCTTATAGAAAAAGGTGATCCAAACTTCCACTGGGTCCGGCCCAACTCCGAGTGGGACCCGATAACACTAAACTACACCTCCGGAACGACGTCGTCTCCCAAAGGCGTAGTACACTCCCACCGCGCAACGTTCATAATGGCACTCGATTCTCTCATCGATTGGAGCGTACCGAAACAACCGGTTTACCTATGGACCCTACCGATGTTCCACTCTAACGGGTGGACCTTCACGTGGGGGATCGCCGCAGCAGGCGGCACCAACGTCTGCTCGCGTAAAGTCAACGCGCCAACAATCCACCGTTTGATCGAATCGCACAAAGTAACGCACATGTGCGCCGCGCCGGTGGTTCTGAACATGCTGCTAACGATAACCGAACCGGTGAAGAATCCGGTCAACGTGGAGACGGTGTTGTACGGGCACCCGGCGGTGAACGAGGTGGCGGTGGTGGCGAGGCCGGATGAGTTCTGGGGGGAGACGCCATGCGCGTTTGTGAGGCTGAAGGAGGGGCTGGTGGCGCCGCCGTCGGAGAAGGAGGTGGTGGAATTTTGCAGAGAGAGGCTGCCGCACTTCATGGTGCCGAAAACGGTGGTGTTTAAAGAGGCGCTGCCGACGACGTCGACGGGGAAGATTCAGAAGCAAGTGCTGAGGATGGATGCACGGGCTATGGGGCCCTTGGCGGCGGCGCCACCACCTAGAGCTAGTCGCATGTAG 1230 0.5561 MNGLTPNPANSPPLTPLTFLERAAIVYGDSHSIIYNRTSFTWSQTHRRCLQLASSLTSIIGVGRGHVISVLSPNTPTMYELHFAVPMCGAILNNLNLRLDSHSLSVLLRHSESKLVFVHSESLSLILQALSKFPKTTPHPSIILITDDADSHAHAHANAYATLSPPVIDTHEGLIEKGDPNFHWVRPNSEWDPITLNYTSGTTSSPKGVVHSHRATFIMALDSLIDWSVPKQPVYLWTLPMFHSNGWTFTWGIAAAGGTNVCSRKVNAPTIHRLIESHKVTHMCAAPVVLNMLLTITEPVKNPVNVETVLYGHPAVNEVAVVARPDEFWGETPCAFVRLKEGLVAPPSEKEVVEFCRERLPHFMVPKTVVFKEALPTTSTGKIQKQVLRMDARAMGPLAAAPPPRASRM 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1977 409 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Aed3g1977 409 PANTHER ACYL-ACTIVATING ENZYME 2 299 - -
Aed3g1977 409 PANTHER ACYL-ACTIVATING ENZYME 304 397 - -
Aed3g1977 409 Gene3D - 14 262 - -
Aed3g1977 409 PANTHER LONG-CHAIN ACYL-COA SYNTHETASE 304 397 - -
Aed3g1977 409 Gene3D - 302 400 IPR045851 -
Aed3g1977 409 Pfam AMP-binding enzyme C-terminal domain 306 382 IPR025110 -
Aed3g1977 409 PANTHER LONG-CHAIN ACYL-COA SYNTHETASE 2 299 - -
Aed3g1977 409 Pfam AMP-binding enzyme 21 361 IPR000873 -
Aed3g1977 409 SUPERFAMILY Acetyl-CoA synthetase-like 303 389 - -
Aed3g1977 409 SUPERFAMILY Acetyl-CoA synthetase-like 10 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1977 Aed-Chr3 23908847 23910535 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1977 306 395 EF-hand Containing Proteins AT1G21540 58.947 3.59e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1977 - - gmx:100789991 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1977 3 23908847 23910535 Aed3g1977 3 23908847 23910535 ECH