Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1757 ATGGCTTCTTTCCTTTCCTCTGCTGTCACTGCAACTCTCAAGCTCCACCCACAATTCCCAAAATACCCACCAAGCTCCTATCCCGCAGAGAAGGGTCAAAGCATTTCTTTCCAGAAAAGCCACAGATTTACACATTTGGATTTTGGGGAAGCACTTTTGTTGACCAAAGAGGGGACAGAGGAGGAGGAGGGAAAATTGTTCTACGTTCCCTTGTTGCAACAATGCTTAGACAAGTGCTCCTATTCAGACACACAAATTGTTCATGGTCATGTCATGAAAACAGGTTGCCATGAAAATTTTTTTGTCATGTCATTTCTGGTCAATGTTTATGCCAAATGTGGGAACATGGAGGATGCCCGCAGGGTGTTTGACAGCATGCCTAGAAGAAACGTGGTGGCGTGGACCACATTAATGGTGGGTTATGCGAAGAAATCGCAGCCAAATCACGCCATTCATTTGTTTCAAGAGATGTTGCATGCAGGAAGTTACCCTTCAGTTTACACTCTTTCTGTTGTTCTACATGCTTGTAGTTCTTTGCAGTCTCTCAAGTTAGGAGATCAATTCCATGCTTACATAATCAAATACCAAGTTGACTTTGACACCAGTGTTGGCACTGCACTTTGTAGTTTTTACTCCAAATGTGGCAGGTTGGAGGATGCTCTGAAAGCATTTAGTAGAATCAGAGAAAAGAATGTTATTTCGTGGACTTCAGCTGTTTCTGCTTGTGGGGACAATGGTGAACCTGTGAAGGGGTTGAGACTTTTTGTTGAGATGATTTCTGAGGACATAAAGCCTAATGAGTTCACTTTTACTAGTGCCTTGAGCCAGTCTTGTGAAATTCTGTCTTTGGAACTTGGGACTCAGGTTCGTTCGTTGTGCATTAAACTTGGCTATGAATCAAACCTACGTGTTAGAAATTCTTTGTTGTATTTGTATCTCAAAAGTGGTTGTATTGGTGAGGCTCATAGGTTGTTTAATGGAATGGATGATGCCAGTATGGTTACATGGAATGCGATGATAGCTGGGCATGCACAGATGATGGAACTCACAAAGGATAATCTTTCTGCATGCCAAAGTGGAAGTGAAGCACTGAAACTTTTCTCGAAGATGAATCGGTCAGGCATGAAACCTGATCTGTTTACCTTATCTAGTGTCTTAAGTGTATGTAGTAAAATGTTGGCTATAGAGCAGGGGGAACAAATTCATGCGCAGACTATCAAAACTGGATTCTTGTCGGATGTGATTGTAAGTACTTCACTAATTAGTATGTACAACAAGTGTGGAAGCATTGAGAGGGCTAGCAAAGCATTTCTGGAGATGTCTACTAGAACTATGATAGCATGGACTTCTATGATTACAGGTTTTTCACAGCATGGTATGTCACAACAAGCATTGCATATTTTTGAGGATATGAGCCTAGCAGGAGTTAAACCAAACGCGGTCACTTTTGTCGGTGTTTTATCAGCATGTAGCCATGCTGGCTTGGCCACTCAAGCACTCAACTACTTTGAGATTATGCAAAAGAAATATAAAATTAAGCCTGTTATGGACCACTATGAATGCATGGTTGATATGTTTGTGAGGTTAGGCCGGCTGGAGCAAGCTCTGAATTTCATTAAGAAAATGAATTATGTGCCTAATGAGTATATTTGGTCAAACTTTATTGCTGGTTGTAGACACCATGGGAATCAGGAGTTGGTTTTTTATGCTGCTGAACAGTTACTAAGTCTCAAACCAAAAGATCCAGAGACATATGTGTTGTTGTTGAATATGCACCTCTCAGCAGAGCGTTTCGATGATGTTTCAAGGGTGAGGAAGATGATGGAAGAGGAGAAAGTTGAAAAGTTGAAGGATTGGAGCTGGATTAGCATTAAAGACAAAGTGTATTCATTCAAAACCAATGACAGAACACACCCACAGAGTTCATTAATATGTGAATCATTGGAGGATTTACTTGCCAAGGCAAAGAATCTTGGATATGAGATGCTAGAAAGTGTGGAAATAAGTGATGAAGAGGAGGAGGAAAAGACACCATCCCCTACCATTTATCACAGTGAGAAGCTGGCCATTACATTTGGGTTGAAGAACTTGCCAAATTCTTCTCCAATAAGAGTTGTTAAGAGCCCCTTAATATGCAGGGATAGCCATAACTTTATTAAGTATGTTTCAACACTAACTGGTAGGGAAATCATTGTTAAAGATAGTAAGAGGCTTCACAAATTTGTCAATGGAGAATGCTCATGTGGAGATTTTGGCGGTTTTATCTAA 2268 0.4065 MASFLSSAVTATLKLHPQFPKYPPSSYPAEKGQSISFQKSHRFTHLDFGEALLLTKEGTEEEEGKLFYVPLLQQCLDKCSYSDTQIVHGHVMKTGCHENFFVMSFLVNVYAKCGNMEDARRVFDSMPRRNVVAWTTLMVGYAKKSQPNHAIHLFQEMLHAGSYPSVYTLSVVLHACSSLQSLKLGDQFHAYIIKYQVDFDTSVGTALCSFYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGEPVKGLRLFVEMISEDIKPNEFTFTSALSQSCEILSLELGTQVRSLCIKLGYESNLRVRNSLLYLYLKSGCIGEAHRLFNGMDDASMVTWNAMIAGHAQMMELTKDNLSACQSGSEALKLFSKMNRSGMKPDLFTLSSVLSVCSKMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVKPNAVTFVGVLSACSHAGLATQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYVPNEYIWSNFIAGCRHHGNQELVFYAAEQLLSLKPKDPETYVLLLNMHLSAERFDDVSRVRKMMEEEKVEKLKDWSWISIKDKVYSFKTNDRTHPQSSLICESLEDLLAKAKNLGYEMLESVEISDEEEEEKTPSPTIYHSEKLAITFGLKNLPNSSPIRVVKSPLICRDSHNFIKYVSTLTGREIIVKDSKRLHKFVNGECSCGDFGGFI 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1757 755 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 60 693 - -
Aed3g1757 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Aed3g1757 755 Gene3D Tetratricopeptide repeat domain 447 662 IPR011990 GO:0005515
Aed3g1757 755 SUPERFAMILY TPR-like 99 230 IPR011990 GO:0005515
Aed3g1757 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 129 IPR002885 -
Aed3g1757 755 Pfam PPR repeat 519 542 IPR002885 -
Aed3g1757 755 Pfam PPR repeat 418 441 IPR002885 -
Aed3g1757 755 Pfam PPR repeat 306 329 IPR002885 -
Aed3g1757 755 Pfam PPR repeat 233 262 IPR002885 -
Aed3g1757 755 Pfam PPR repeat 211 232 IPR002885 -
Aed3g1757 755 PANTHER OS01G0913400 PROTEIN-RELATED 60 693 - -
Aed3g1757 755 Pfam E motif 561 622 IPR046848 -
Aed3g1757 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Aed3g1757 755 Gene3D Tetratricopeptide repeat domain 184 285 IPR011990 GO:0005515
Aed3g1757 755 Gene3D Tetratricopeptide repeat domain 286 407 IPR011990 GO:0005515
Aed3g1757 755 Gene3D Tetratricopeptide repeat domain 62 183 IPR011990 GO:0005515
Aed3g1757 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Aed3g1757 755 TIGRFAM PPR: pentatricopeptide repeat domain 132 165 IPR002885 -
Aed3g1757 755 TIGRFAM PPR: pentatricopeptide repeat domain 106 132 IPR002885 -
Aed3g1757 755 TIGRFAM PPR: pentatricopeptide repeat domain 447 480 IPR002885 -
Aed3g1757 755 TIGRFAM PPR: pentatricopeptide repeat domain 233 267 IPR002885 -
Aed3g1757 755 Pfam PPR repeat family 333 390 IPR002885 -
Aed3g1757 755 Pfam PPR repeat family 129 177 IPR002885 -
Aed3g1757 755 Pfam PPR repeat family 446 491 IPR002885 -
Aed3g1757 755 Pfam DYW family of nucleic acid deaminases 668 751 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1757 Aed-Chr3 22170884 22174130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1757 68 751 Glycoside Hydrolase AT3G49170 35.447 6.42e-146 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1757 - - gmx:100781103 1338.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1757 3 22170884 22174130 Aed3g1757 3 22170884 22174130 ECH