Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1756 ATGGCCATGGCTCTTCGCAGACTCTCCTCCACCGTCAACAAACCTTTCTCCAACGCCACTTCCATTTATCGCACGACCTCTTCGCTCTCCGCTCACGAAAAAGACAAATCTCGCGCCGATTGGATAAAGCAGCTCAACGATCCTCTCGAGGTCATCGATCCCGAGATCGCGGACATAATCGAGCTCGAAAAATCGCGTCAATGGAAGGGGTTCGAGCTTATACCTTCGGAAAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCGGGTGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCGCTTGAAGCTTTTGGGTTGGATCCTGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTATCACATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCAGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTCTTCAAGAAGGGTGTGAAAGAGATAAACAAGCTAGGGAAGGAAGTGAGTGTTAAATTATAA 933 0.4491 MAMALRRLSSTVNKPFSNATSIYRTTSSLSAHEKDKSRADWIKQLNDPLEVIDPEIADIIELEKSRQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFGLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFKKGVKEINKLGKEVSVKL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1756 310 CDD SHMT 53 301 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aed3g1756 310 SUPERFAMILY PLP-dependent transferases 44 298 IPR015424 -
Aed3g1756 310 Gene3D Aspartate Aminotransferase, domain 1 53 77 IPR015422 GO:0003824
Aed3g1756 310 Pfam Serine hydroxymethyltransferase 50 308 IPR039429 -
Aed3g1756 310 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 272 288 IPR019798 GO:0030170
Aed3g1756 310 Gene3D - 78 305 IPR015421 GO:0003824
Aed3g1756 310 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 6 306 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aed3g1756 310 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 6 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1756 Aed-Chr3 22158392 22164199 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1756 K00600 - gmx:100812952 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1756 3 22158392 22164199 Aed3g1756 3 22158392 22164199 ECH