Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1722 ATGCGTGTCACAATCGATCTAGGGTTTTGGAGCCTGGCCTTCGTCGCGGTCGTCTGCCTCGTCGTGCCGGCGATCGCCTTTGTTTTATATCGCCGGGGGCGGAGCGCGGCGGCGAGGGCGGAGGAGATCAAGAGGCTCCTCGTTCTCGCCGAGGAGGAGTCCGTTAGGGCTGAGTCCGAGGCTTCGTACTACCAATTCGCCGTCGTTTCGCCGCCGAAGAACAAACTATGCGCCGTGTGTTACTCTCCCACCACCACGCGGTGCGCGAGGTGCAAAGCGGTTCATTACTGTTCTGGAAAGTGCCAAATTGTTCATTGGCGACAAGGTCACAAAGACAACTGTCATCCTCCCAGCCCAACTTGCCAGACTGATGACCTGGTAATTGATCTTGGAAAGAAGGTAGCAGAACCTGACTATCGTGGAATCCATAATGAGAAGTATGCAACATCTTCTGAGAAACCATCGGTGTCTGAAAGGACCGCCTCACCTGATATTTCACGTGCAAAGGATGATAGGGCAAGAGTTGAGTCTCTTCAAGAGGGAAATGTTACAGGCTCTAATTCTGAATTATCTAATAACTCATTCTCTGGATTCTCAGCTTCCAATGGTGCTAGTGAATCATCTGATGATTCTTCTGTCTGTGAGAGTATAACCTCAAATGAACATGAGAGATGCAAGGGACATATTTTTGTGGACCCCACCAATGACATTTCTGACCCCACCAATAGCATTGGTGAGTCCACTCCATTATCTCCTAAGTTTGCTAGTTTGCATGATTCAGTTGATGGTTATCCTGCAATGCATAAATTAAATCAAGTTAGACCTGGATTGGGGGGTAAAGAAGAGAGTAAGCTCACATCAAATGGTAGTTCTGGTTTGCGTATGCGGAAAGGGGCAACAATTGAGCCTTCTACAGTGTCTTCTGGATTCTGGAATACGACTCTTGATTCAACAAGGATAAAAGGTGACTCTAATAGTGACCCTCTTTCATCCCACTCTGATGATTCTGCTCCAAAGTCAGTTGAGAACAATATGCCATGTGCAGGATCAGCATCTTCAGAGAATGAGGGTGTAGATTCTTCAGGTTGTGCTGATGCCTTGAGCATCCATAATTTGCAAACAGTTGGTTCTAGGGTATCAAATCATGTTATCAACCCTGGCAGCACCTTGAAGTCTGCTGAAAGTAGATGTCAGCCACGTGCATTTGCTGATACTAAGTTAGTTTCTAGAACTGAAAAGCATTCACATCGTAGTACAAAATGTGGGAATAATGGCATCCAATCTGGCACTGCTACATCATCTCAGGTTGACAGCTCTTCAAATTCTGGGAATGACCTGAAAACATTTGTTCTAAAAGTTTCTGATCAGTCTAGAGTATTAAAGTTGTCTAAACCCTTTCTATCAGCTGTTGGGAGTGATATTACTGGAAAATACAGTGACAAGGGTCTTTTTCCATATGATTTGTTTGTTAAGCTTTATAACTGGAACAGAGTGGAGTTGCAACCATTTGGTCTTATAAACTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCATTTACACCTCCCCTGACTGCTTATCTTCTTCAAGGACTACATTCTAAATCATGTGCAAACAAAAAATGGTGTTTCACCTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAAATATCCCATCTCACCTGTGGGCATACTCTCTCAACTACAGAATATTGGGAGTCAACTGGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGGCTTGCTATTGAGACAATGCAATCTGTTTGCCTTATGGAATCTAGGGATAACATGTCAAATACATTGAAAGAGGAAACTAATTTAATGGGCCTAACATTTGGAGGTTACCTTCAATCAAAGATAAAATGCATGAAATGTGGAGGGAAATCTGACCGTCAAGAAAGGATGATGGATCTGACAGTTGAGATAGAAGGGGAGATAGCAACCCTGGAGGAGGCCCTTCGACAGTTTACAAGTGCTGAGACTCTGGATGGAGAAAACAAGTACCACTGTGTCAGGTGTAAATCTTATGAGAAGGCCAAGAAGAAAATGACAGTTTTGGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTCAGTCAGGAAAATTTGGGAAGCTCAATAAACCTATTCAGTTTCCTGAAATACTGGACTTGGCACCTTTCATGAGTGGGACTAGTGATTTGCCTATATACAGGCTATATGGGGTAGTTGTTCACCTGGATACCATGAATGCTGCTTTTTCAGGTCACTATGTGTGCTATTTGAAGAATTTCCAAAGCAGGTGGTTCAAGGTTGATGATAGTGTGGTAACAGCTGTTGAATTGGAAAGTGTCTTGGCAAAAGGAGCATACATGCTTTTTTATGCAAGGTGCTCACCTAGGGCCCCAAGATTAATCAGGAGCAGTATAGTATCTTCAGATTCAAAATGGAAATTTAATGGAAAAACTGCCGCAATGAAGTTGAGACGACTATCTACCGGTGCTGGTGTTAATTTGACATCTCCAGATGGTTCACCCTCCTTAGATACTATCTATTCGAAGCTTCTCCACTCGAAAAGGATTTTGGAAGAAGACTCATCAAGTGATAATTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCTTGCAGTACAGATAGCACGAGTGATTCAACCGGTACAGATGACTTTGCTGATTATATTATTGGTGAATTAGGACGTGGTGGTGCAGGTGGCATGCTGAGAAATTCCGATTCCAACATTTCCCTTACATTGTCATCTTCTCCCCACTCTAGATATTTTCCTTCTTCTGATATAGACCAACATGATTCAACTGGGTTCCAGCCACCTCTCTCAAACGGTCTTTTGTACAGTAACAGAGTAGTGGATGTTAAAAGGAGTGGGGGAGGTGCTTCTCATTTTCATCCTGACACAAATATAGAGCAGCATAGGAAGTTAGATACAACAAGTAGAAGTAGCAGTTGTTTTAGGGAATCCGACTCTGTACAGAGAGCAGGATCCAACCATTTTAATGATAGAAATTCTGGTGTATCATGTATAAAGTCAAGAGACAGAACGGATTGA 3111 0.4285 MRVTIDLGFWSLAFVAVVCLVVPAIAFVLYRRGRSAAARAEEIKRLLVLAEEESVRAESEASYYQFAVVSPPKNKLCAVCYSPTTTRCARCKAVHYCSGKCQIVHWRQGHKDNCHPPSPTCQTDDLVIDLGKKVAEPDYRGIHNEKYATSSEKPSVSERTASPDISRAKDDRARVESLQEGNVTGSNSELSNNSFSGFSASNGASESSDDSSVCESITSNEHERCKGHIFVDPTNDISDPTNSIGESTPLSPKFASLHDSVDGYPAMHKLNQVRPGLGGKEESKLTSNGSSGLRMRKGATIEPSTVSSGFWNTTLDSTRIKGDSNSDPLSSHSDDSAPKSVENNMPCAGSASSENEGVDSSGCADALSIHNLQTVGSRVSNHVINPGSTLKSAESRCQPRAFADTKLVSRTEKHSHRSTKCGNNGIQSGTATSSQVDSSSNSGNDLKTFVLKVSDQSRVLKLSKPFLSAVGSDITGKYSDKGLFPYDLFVKLYNWNRVELQPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFESLILKSKDTKYPISPVGILSQLQNIGSQLGNGREEDAHEFLRLAIETMQSVCLMESRDNMSNTLKEETNLMGLTFGGYLQSKIKCMKCGGKSDRQERMMDLTVEIEGEIATLEEALRQFTSAETLDGENKYHCVRCKSYEKAKKKMTVLEAPNVLTIALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDLPIYRLYGVVVHLDTMNAAFSGHYVCYLKNFQSRWFKVDDSVVTAVELESVLAKGAYMLFYARCSPRAPRLIRSSIVSSDSKWKFNGKTAAMKLRRLSTGAGVNLTSPDGSPSLDTIYSKLLHSKRILEEDSSSDNSSLISSNSDEGSCSTDSTSDSTGTDDFADYIIGELGRGGAGGMLRNSDSNISLTLSSSPHSRYFPSSDIDQHDSTGFQPPLSNGLLYSNRVVDVKRSGGGASHFHPDTNIEQHRKLDTTSRSSSCFRESDSVQRAGSNHFNDRNSGVSCIKSRDRTD 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1722 1036 Pfam MYND finger 77 114 IPR002893 -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 141 219 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 301 359 - -
Aed3g1722 1036 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 25 1019 - -
Aed3g1722 1036 Coils Coil 40 60 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 876 900 - -
Aed3g1722 1036 Pfam Ubiquitin carboxyl-terminal hydrolase 503 804 IPR001394 GO:0004843|GO:0016579
Aed3g1722 1036 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Aed3g1722 1036 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 503 807 IPR028889 -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 179 215 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 271 361 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 407 442 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 977 1036 - -
Aed3g1722 1036 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 25 1019 - -
Aed3g1722 1036 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Aed3g1722 1036 SUPERFAMILY Cysteine proteinases 499 810 IPR038765 -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 986 1000 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 420 442 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 148 162 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 1001 1026 - -
Aed3g1722 1036 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 504 519 IPR018200 GO:0004843|GO:0006511
Aed3g1722 1036 Gene3D Cysteine proteinases 496 815 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 935 961 - -
Aed3g1722 1036 SUPERFAMILY HIT/MYND zinc finger-like 73 116 - -
Aed3g1722 1036 MobiDBLite consensus disorder prediction 163 177 - -
Aed3g1722 1036 Gene3D - 67 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1722 Aed-Chr3 21834894 21842030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1722 483 811 Miscellaneous Gene Families AT4G31670 52.266 1.14e-122 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1722 K11855 - gmx:100782303 1624.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1722 3 21834894 21842030 Aed3g1722 3 21834894 21842030 ECH