Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1624 ATGCGAGAGTCTGAATATGCTCAGAGGAATCCACATGCAAGATTGATAAGACTTGGAATTGGTGACACCACAGAGCCAATACCAGACATCATAACTTCAGCTATGGCTAAGCAAGCATTGGCTCTGTCAACAGCTCAAGGATATAAGGGTTATGGACCTGAGCAAGGAAACAGGATGCTTCTGGACTCTAGTTTGTCAATAGCTGTGCAGGATCCAACTTTTCCGGGATACATAGATTCTAGTGTGATTGTTGGTAGAACTGGAGGGTTGAAAGCAGCAGGGAGTGGAAAGTACAAAAACATAGTGTACATGAAGTGTGGAGCCGAGAACAATTTCTTTCCAAACCTATCAATTACTCCAAGGACTGATTTGATTTTCTTTTGTTCTCCAAACAATCCAACTGGTAGTGCTGCATCTCGGCAGCAACTTGAGCAACTTGTCAAGTTTGCAAAAGCAAATGGGTCTATCATTATTTATGATGCTGCTTACATATCAGATGATAGCCCAAGATCAATTTTTGAAATTCCTGGAGCCAAAGAGGTGGCAATTGAAATATCATCATTTTCAAAGTTTGCTGGTTTTATTGGTGTCCGGCTTGGGTGGACAGTTGTACCTGAAGAGTTGTTGTATGCTAATGGTTATCCTATCATAAAGGATTATGATCGCATTGTTTGCACATGCTTCAATGGTGCCTCTAACATTGTTCAAGCTGGTGGACTTGCATGCCTTTCTCCACAAGGATTTCAGACACTGAAAACAACCATGCGTTACTACATGAAAAATGCGAGAATACTTGTTGAGACGTTTGAGTCAATGGCTCTAAAGGTATATGGCGGCAAAAATGGGCCATATGTGTGGGTGCATTTTCCAGGGTTGAGTTCTTGGGATGTGTTCAACAAAATTCTTGAGACAGCAGCCATAGTCACTGTCCCTGGTATTGGATTTGGTCCTGCTGGCGAAGGTTATATTAGAGTCAGTGCCTTTGGTCACAGAGATTCTGTATTGGAAGCTTCAAGGAGACTCACAAAACTACTACTATAA 1041 0.4188 MRESEYAQRNPHARLIRLGIGDTTEPIPDIITSAMAKQALALSTAQGYKGYGPEQGNRMLLDSSLSIAVQDPTFPGYIDSSVIVGRTGGLKAAGSGKYKNIVYMKCGAENNFFPNLSITPRTDLIFFCSPNNPTGSAASRQQLEQLVKFAKANGSIIIYDAAYISDDSPRSIFEIPGAKEVAIEISSFSKFAGFIGVRLGWTVVPEELLYANGYPIIKDYDRIVCTCFNGASNIVQAGGLACLSPQGFQTLKTTMRYYMKNARILVETFESMALKVYGGKNGPYVWVHFPGLSSWDVFNKILETAAIVTVPGIGFGPAGEGYIRVSAFGHRDSVLEASRRLTKLLL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1624 346 PANTHER AMINOTRANSFERASE 58 345 IPR019942 GO:0008483
Aed3g1624 346 Gene3D - 61 245 IPR015421 GO:0003824
Aed3g1624 346 Gene3D - 25 60 IPR015421 GO:0003824
Aed3g1624 346 PANTHER AMINOTRANSFERASE 1 60 IPR019942 GO:0008483
Aed3g1624 346 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC-RELATED 58 345 - -
Aed3g1624 346 Pfam Aminotransferase class I and II 118 335 IPR004839 GO:0009058|GO:0030170
Aed3g1624 346 Gene3D Aspartate Aminotransferase, domain 1 2 24 IPR015422 GO:0003824
Aed3g1624 346 Gene3D Aspartate Aminotransferase, domain 1 246 341 IPR015422 GO:0003824
Aed3g1624 346 CDD AAT_like 16 341 - -
Aed3g1624 346 SUPERFAMILY PLP-dependent transferases 4 341 IPR015424 -
Aed3g1624 346 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 60 343 IPR019942 GO:0008483
Aed3g1624 346 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC-RELATED 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1624 Aed-Chr3 20782392 20790531 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1624 K10206 - qsu:112023739 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1624 3 20782392 20790531 Aed3g1624 3 20782392 20790531 ECH