Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1540 ATGACGCATCATAAAAGGAATATGTTTTGGATTTGCTTCCTCTTTGTATCCCTTCTTTCTCTCTTCACTGCTCCGGTCTCCTCCGCCGCAGAGAAGGACTTCGTTCTCTCTTTGGATCACTCCAACTTCTCCGACACCGTCACCAAACACGATTTCGTTATATTATCAAACATAGAGTATGGGGAAAAGAATGTGTGTGGCCACTGCATGCAGCTTGCTCCTGAGTATGAGAAAGCTGCTTCTATCTTGAGTAGCAATGATCCTCCGGTTATTTTAGCCAAAGTTGATGCCAATGAGGAAAAGAACAAAGAACTTGCAAGCGAATTTCAGGTCCAGGGATTTCCAACCATTAAGATTCTGAGAAATGGAGGCAAGGTTGTTCAAGATTACAAAGGTCCTCGTGAAGCAGATGGCATTGTTGACTATTTGAAGAAGCAAAGTGGTGCTGCAACAACTGAAATTAAATCTGCAGATGATGCTATATTTCTTGGTGATTTAAAAATGATTAAGACGGGCCAGTTTGAGAACTTCAGTGCATTGGCAGAGAAATTGCGTTCTGAATATGAGTTCGGTCACACCTTGGATGCCAAACACCTTCCACTTGGAGAATCATCGGTGACTGGGCCTCTAGTTAGATTATTCAAGCCATTTGATGAACTTTTTGTTGATTTCCATGATTTTCATATGGAAGCCTTAGAGAAATTTGTTGATGAATCTAGTGTCCCTGTTGTGACTTTCTTTAACAATGACCCTAGCAATCACCCTTTTGTTCAATATAGACAACACGGCATAGGCTTTCTAGTGGGAGACATAGAAGCCAGTCAAGGTGCATTCCAGTATTTTGGCGTTAAGGAAAACCAAGTGCCTCTAATTATCATTCAACAAAGTGATGGGAAAAAGTATTTGAAAACTAATGATGGAAGTGTTCAACAATTCAAGAAGTCTGAACGTATTCCTGAAGTTAACAATGAACCTGTTAAAGTGGTAGTTGCAGACAATTTCCAGGACATTGTTTTCAACTCAGGGAAAAATGTTTTTCTGGAGTTTTATGCTCCCTGGTGTGGTCATTGCAAGAAGTTGGCTCCAATATTGGAGGAAGTTGGTGTTTCATATCAAAGTAACCCTGATGTTATTATTGCAAAACTGGATGCAACTGGCAACGACATACCACGCGACCTTTTTGACATACAAGGTTATCCAACTCTGTTCTTAAGGTCAGCAAGTGGAAAGATATCACAGTATAATGGAAGTAGGACAAAGGAAGACATCATAGATTTCATCGAAAAGAACCGGGATAAAGCAGCAGATCAGCAGCAAGAACAAGCAAAAGATGAGCTTTGA 1341 0.4049 MTHHKRNMFWICFLFVSLLSLFTAPVSSAAEKDFVLSLDHSNFSDTVTKHDFVILSNIEYGEKNVCGHCMQLAPEYEKAASILSSNDPPVILAKVDANEEKNKELASEFQVQGFPTIKILRNGGKVVQDYKGPREADGIVDYLKKQSGAATTEIKSADDAIFLGDLKMIKTGQFENFSALAEKLRSEYEFGHTLDAKHLPLGESSVTGPLVRLFKPFDELFVDFHDFHMEALEKFVDESSVPVVTFFNNDPSNHPFVQYRQHGIGFLVGDIEASQGAFQYFGVKENQVPLIIIQQSDGKKYLKTNDGSVQQFKKSERIPEVNNEPVKVVVADNFQDIVFNSGKNVFLEFYAPWCGHCKKLAPILEEVGVSYQSNPDVIIAKLDATGNDIPRDLFDIQGYPTLFLRSASGKISQYNGSRTKEDIIDFIEKNRDKAADQQQEQAKDEL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1540 446 SUPERFAMILY Thioredoxin-like 153 242 IPR036249 -
Aed3g1540 446 Gene3D Glutaredoxin 25 147 - -
Aed3g1540 446 Pfam Thioredoxin-like domain 173 249 - -
Aed3g1540 446 Gene3D Glutaredoxin 321 435 - -
Aed3g1540 446 PANTHER PROTEIN DISULFIDE ISOMERASE 257 441 - -
Aed3g1540 446 PANTHER PROTEIN DISULFIDE-ISOMERASE 6 258 - -
Aed3g1540 446 SUPERFAMILY Thioredoxin-like 35 148 IPR036249 -
Aed3g1540 446 Pfam Thioredoxin 35 145 IPR013766 -
Aed3g1540 446 Pfam Thioredoxin 326 429 IPR013766 -
Aed3g1540 446 Gene3D Glutaredoxin 256 320 - -
Aed3g1540 446 ProSiteProfiles Thioredoxin domain profile. 18 148 IPR013766 -
Aed3g1540 446 SUPERFAMILY Thioredoxin-like 323 430 IPR036249 -
Aed3g1540 446 Gene3D Glutaredoxin 148 251 - -
Aed3g1540 446 CDD PDI_b_family 153 236 - -
Aed3g1540 446 PANTHER PROTEIN DISULFIDE-ISOMERASE 257 441 - -
Aed3g1540 446 PANTHER PROTEIN DISULFIDE ISOMERASE 6 258 - -
Aed3g1540 446 CDD PDI_a_family 36 143 - -
Aed3g1540 446 CDD PDI_a_PDI_a'_C 325 427 - -
Aed3g1540 446 ProSiteProfiles Thioredoxin domain profile. 307 432 IPR013766 -
Aed3g1540 446 ProSitePatterns Thioredoxin family active site. 346 364 IPR017937 -
Aed3g1540 446 PRINTS Thioredoxin family signature 353 362 - -
Aed3g1540 446 PRINTS Thioredoxin family signature 345 353 - -
Aed3g1540 446 PRINTS Thioredoxin family signature 395 406 - -
Aed3g1540 446 SUPERFAMILY Thioredoxin-like 228 323 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1540 Aed-Chr3 19863543 19868884 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1540 K09580 - gmx:100788702 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1540 3 19863543 19868884 Aed3g1540 3 19863543 19868884 ECH