Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1537 ATGAAGGGAACAATAGCATTGCACACACTTTTGCTATTTCTTCTGTTTTCTGCCATTTTCCCACTCTCTTTCTCAGCTCAACCCCGCAGTTCCAAGAAGCCCTCCACCCCATTTGATAATCATCATCGCTTTTCATCCTCAGCTGTTTTCAAAGTTCATGGAAATGTGTACCCTCTTGGGCATTACACAGTGTCTCTCAACATTGGCTATCCCCCCAAGCTTTACGACCTTGACATTGACTCAGGTAGTGACCTCACTTGGGTTCAGTGTGATGCACCATGCAAAGGTTGCACCAAGCCTCAAGATCAACTTTATAAACCCAATCACAACCTTGTGCAATGTGTGGACCAGTTGTGTTCTGAAGTGCACTTATCAGCAGACCATAATTGTGCTTCCCCAGATGACCAATGTGACTATGAGGTTGAGTATGCAGATAATGGATCGTCTCTGGGTGTGCTAGTCCGGGACTACATTCCTTTTCAATTCACCAACGGTTCTGTGGTGCGCCCTAGGATAGCCTTTGGGTGTGGATATGATCAAAAGTATTCTTCTACCTCCCCACCTTCTACAGCAGGAGTCCTCGGCCTTGGCAATGGCAGAGTAAGCATTTTATCTCAACTTCATTCTTTGGGTCTGATCCGCAATGTGGTTGGCCATTGCTTAAGTGCTCAAGGAGGAGGTTTTTTATTCTTTGGAGGTGATCACATTCCCTCTTCAGGAGTTGCTTGGACATCCATGTTGCCTAGTTCTTTAGAAAAACACTACAGCTCAGGACCAGCAGAACTGGTTTTCAATGGTAAGGCTACTACTGTTAAGGATCTTGAACTTATCTTTGATAGTGGGAGCTCTTACACATACTTTAATGCTCAGGCCTATCAAACTGTTGTTGATTTGGGCGCAAAGTCTTTCAACTCGTTAAGTGATGTCAAGAAATATTTCAAGCCCCTAGCATTCAGGTTCACAAGTAACAAGAATTTGCAGATGCATCTACCACCAGAAGCTTATCTTATTATCACTAAACATGGCAATGTCTGCTTGGGGATTCTAGATGGAACTGAAGTAGGACTAGAAAATCTCAACATTATTGGAGATGTCTCTTTACAAGATAAACTCGTGATTTATGACAACGAGAAACAGCAGATTGGATGGGTATCTTCAAATTGTGATAGGCTTCCCAGTGTGGATCGTGATTTGGTAGGTGATTTTCCACACCCATATGCTACCAATTTGGGTATCTTTGGGGACCATTGCCCTGCATCTTATGAAGAAACAGACTGTAAATGA 1284 0.433 MKGTIALHTLLLFLLFSAIFPLSFSAQPRSSKKPSTPFDNHHRFSSSAVFKVHGNVYPLGHYTVSLNIGYPPKLYDLDIDSGSDLTWVQCDAPCKGCTKPQDQLYKPNHNLVQCVDQLCSEVHLSADHNCASPDDQCDYEVEYADNGSSLGVLVRDYIPFQFTNGSVVRPRIAFGCGYDQKYSSTSPPSTAGVLGLGNGRVSILSQLHSLGLIRNVVGHCLSAQGGGFLFFGGDHIPSSGVAWTSMLPSSLEKHYSSGPAELVFNGKATTVKDLELIFDSGSSYTYFNAQAYQTVVDLGAKSFNSLSDVKKYFKPLAFRFTSNKNLQMHLPPEAYLIITKHGNVCLGILDGTEVGLENLNIIGDVSLQDKLVIYDNEKQQIGWVSSNCDRLPSVDRDLVGDFPHPYATNLGIFGDHCPASYEETDCK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1537 427 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 299 391 - -
Aed3g1537 427 PRINTS Pepsin (A1) aspartic protease family signature 276 287 IPR001461 GO:0004190|GO:0006508
Aed3g1537 427 PRINTS Pepsin (A1) aspartic protease family signature 360 375 IPR001461 GO:0004190|GO:0006508
Aed3g1537 427 PRINTS Pepsin (A1) aspartic protease family signature 68 88 IPR001461 GO:0004190|GO:0006508
Aed3g1537 427 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 298 - -
Aed3g1537 427 PANTHER ASPARTYL PROTEASES 8 298 IPR001461 GO:0004190|GO:0006508
Aed3g1537 427 SUPERFAMILY Acid proteases 54 392 IPR021109 -
Aed3g1537 427 Pfam Xylanase inhibitor N-terminal 62 233 IPR032861 -
Aed3g1537 427 Gene3D Acid Proteases 39 233 IPR021109 -
Aed3g1537 427 Pfam Xylanase inhibitor C-terminal 313 383 IPR032799 -
Aed3g1537 427 Gene3D Acid Proteases 234 392 IPR021109 -
Aed3g1537 427 PANTHER ASPARTYL PROTEASES 299 391 IPR001461 GO:0004190|GO:0006508
Aed3g1537 427 ProSiteProfiles Peptidase family A1 domain profile. 62 384 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1537 Aed-Chr3 19820260 19824868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1537 46 392 Miscellaneous Gene Families AT1G44130 54.960 1.27e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1537 - - gmx:100796332 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1537 3 19820260 19824868 Aed3g1537 3 19820260 19824868 ECH