Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2365 ATGGCTAATGCTCATCACTATTCACTGGTGATGATTATTATGAAACTTGGCTTGCTTCTAATCAGAAGCAGAAGCAGCTGCTACCAATTCTCGTCAGTTCCGGACCTCAAGTATCTCCTTAGCAACGCCGCAAGATTGAAGAACCCTAAACACAAACATGCGACCGAAATCCACTCCCAAATCGTAACAACCAACCAGGTGTCCCTCTCCAACATCAACACCCTCATCCTCTTGTATGCAAAATGCGGCTCCATCCAGCACACGCTCCTCTTGTTCAACACAACCCCTCACGCCTCAACCCACGTCGTCACATGGACCACACTCATATCCCAACTCTCGCATTTCAACAAACACTTCCAAGCCTTGACATGTTTCAACCACATGCGAACCACGGGCATATACCCAAACCAGTTCACCTTCTCAGCCATCTTACCCGCGTGCGCACACGCAACGCTCCTTTCAGAGGGTCAACAAATCCACGCCTTGATTCATAAACACGGCTTCGAAACCGACACTTTTGTTGCCACCGCGTTGTTAGACATGTACGCAAAGTGCGGCTCCATGTCGCTGGCGGAGAATGTGTTCGAGGAAATGCCCCACAGAAACCTCGTTTCCTGGAACTCTATGATTGTCGGGTTTGTTAAAAACAAGTTGTACGGTCGTGCCATTGGGGTTTTCAGGGAGGTTCTTTCACTTGGCCCCGACCAAGTTAGTGTCTCTAGCGTTTTGACTGCTTGTTCTGGGTTGGTCGAGTTAGGTTTTGGGAAGCAGGTGCATGGGAGCATTGTTAAGCGTGGTTTGGTGGGTCTGGTTTACGTTAAAAACTCGCTGGTGGACATGTACAGTAAATGCGGGTTGTTTGAGGATGCAACCAAGTTGTTCTATGCTGGTGGAGATAATGATGTTGTTACGTGGAATGTAATCATCATGGGATGCGTTCATAGCCATAATTTTGAACAGGCTTGCACCTATTTCCAAGCTATGATAAGGGAAGGTGTAGAACCCGACCAGGCTACGTACTCTTCGCTTCTTCACGCTTCTGCAAGTATTGCAGCATTAATACAGGGGACCATTATCCATAGTCATGTATTAAAAACCGGGCATGTGAAAAACGGTTGTGTTTCTAGTTCTTTGGTGACAATGTATGGGAAATGTGGGAGCATGTTAGACGCTTATCAAGTTTTTCGAGAAACCAAGGAACATAATGTGGTTTGTTGGACGGCTATCATAACAGTTTGCCATCAGCATGGTTGTGCGAATGAGGCAATTGAGTTGTTTGAGGAGATGCTCAAAAAGGGGGTTGTGCCGGAATACATTACTTTTGTTTCCGTGTTGTCGGCTTGCAGCCATGCGGGGAATGTTGATGATGGTTTTAAGTACTTCAATTCCATGGCTAATGTTCATAACATTGAACCTGGGCTTGAGCATTATGCTTGCATGGTTGACTTGCTTGGTCGTGTTGGTCGATTGGAGGAAGCATGGAGGTTCATTGAATCGATGCCAATTGAGCCCGACTCGTTGGTTTGGGGGGCTTTGCTCGGGGCATGTGGAAAACATGCCAATGTTGAAATGGGAAGAGAGGTTGCAGAGAGGCTTTTCAAGTTGGAACCGGATAATCCAGGAAACTATGTGCTGCTTTCGAATATCTATACGAGACATGGGATGTTGGAAGAAGCTGTTGAGGTCAGAAGATTGATGGGGATCCATGGGGTGAGGAAAGAGATTGGGTGTAGCTGGATTGATGTTAAGAACATGACCTTTGTGTTCAATGTGAATGATAGGTCACATTCAAGGACACAAGAGATTTATAAAATGTTGCAGAAGTTGAAGGAGTTGATAAAGAGGAGAGGATATGTGGCTGAGACCCAATTTGCAACTAACAGTGTGGAAGGCTCTGCAGAGCAAAGTTTGTGGGGTCACAGTGAGAAATTGGCTCTTGCATTTGGTCTTCTGGCCCTCCCACCTGGGTCTCCGATAAGGATAAAGAAGAATTTGAGGACCTGTGGTGATTGTCACACTATTATGAAGTTTGCTTCAGAGATTTTTCAGAGAGAAATTATTGTGAGAGATATTAATAGGTTTCATCGATTCACAAATGGATCGTGCTCTTGTAGAGATTATTGGTGA 2127 0.456 MANAHHYSLVMIIMKLGLLLIRSRSSCYQFSSVPDLKYLLSNAARLKNPKHKHATEIHSQIVTTNQVSLSNINTLILLYAKCGSIQHTLLLFNTTPHASTHVVTWTTLISQLSHFNKHFQALTCFNHMRTTGIYPNQFTFSAILPACAHATLLSEGQQIHALIHKHGFETDTFVATALLDMYAKCGSMSLAENVFEEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSVSSVLTACSGLVELGFGKQVHGSIVKRGLVGLVYVKNSLVDMYSKCGLFEDATKLFYAGGDNDVVTWNVIIMGCVHSHNFEQACTYFQAMIREGVEPDQATYSSLLHASASIAALIQGTIIHSHVLKTGHVKNGCVSSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAIITVCHQHGCANEAIELFEEMLKKGVVPEYITFVSVLSACSHAGNVDDGFKYFNSMANVHNIEPGLEHYACMVDLLGRVGRLEEAWRFIESMPIEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYVLLSNIYTRHGMLEEAVEVRRLMGIHGVRKEIGCSWIDVKNMTFVFNVNDRSHSRTQEIYKMLQKLKELIKRRGYVAETQFATNSVEGSAEQSLWGHSEKLALAFGLLALPPGSPIRIKKNLRTCGDCHTIMKFASEIFQREIIVRDINRFHRFTNGSCSCRDYW 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2365 708 SUPERFAMILY TPR-like 206 562 IPR011990 GO:0005515
Aed2g2365 708 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 701 - -
Aed2g2365 708 Pfam E motif 519 581 IPR046848 -
Aed2g2365 708 Pfam DYW family of nucleic acid deaminases 617 708 IPR032867 GO:0008270
Aed2g2365 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Aed2g2365 708 Pfam PPR repeat family 301 346 IPR002885 -
Aed2g2365 708 Pfam PPR repeat family 402 449 IPR002885 -
Aed2g2365 708 Pfam PPR repeat family 102 148 IPR002885 -
Aed2g2365 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Aed2g2365 708 Gene3D Tetratricopeptide repeat domain 19 155 IPR011990 GO:0005515
Aed2g2365 708 PANTHER OS07G0578800 PROTEIN-RELATED 25 701 IPR045215 GO:0003723|GO:0009451
Aed2g2365 708 Gene3D Tetratricopeptide repeat domain 156 252 IPR011990 GO:0005515
Aed2g2365 708 Gene3D Tetratricopeptide repeat domain 254 355 IPR011990 GO:0005515
Aed2g2365 708 Gene3D Tetratricopeptide repeat domain 373 647 IPR011990 GO:0005515
Aed2g2365 708 Pfam PPR repeat 477 500 IPR002885 -
Aed2g2365 708 Pfam PPR repeat 275 294 IPR002885 -
Aed2g2365 708 Pfam PPR repeat 176 202 IPR002885 -
Aed2g2365 708 Pfam PPR repeat 204 233 IPR002885 -
Aed2g2365 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Aed2g2365 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Aed2g2365 708 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Aed2g2365 708 TIGRFAM PPR: pentatricopeptide repeat domain 404 436 IPR002885 -
Aed2g2365 708 TIGRFAM PPR: pentatricopeptide repeat domain 204 231 IPR002885 -
Aed2g2365 708 TIGRFAM PPR: pentatricopeptide repeat domain 103 136 IPR002885 -
Aed2g2365 708 TIGRFAM PPR: pentatricopeptide repeat domain 439 464 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2365 Aed-Chr2 26883941 26886067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2365 101 708 Glycoside Hydrolase AT3G49170 40.161 7.71e-159 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2365 - - gmx:100808394 1209.13