Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2323 ATGTGTACGGTTACATCGGCAAAGCTTAACTACATGATCCACGCTTACATACAAGACAACAGCATAAACAATGCTCGCAAACTGTTTGACGAAAACCCCTCGTCCCGCAACCTCATATCCTGGAACTTGATGATGACTGGTTATGTCAAACACCATCAAATTGAACATGCCCACTTCCTGTTCGATCAAATGCCCTTCAAAGACGCAGTTTCCTGGAATATCATGCTCTCTGGTTTTCACAAAACCGCAAACTCTGATTGGTTGTACCACTGTTTCTTGCAAATGGGAAGAGCTGGTGTGGCCCCCGATGACTATACCATCTCCACAGTGCTCAGAGCAGTTATAAGCACTGAGTTGGATGTTTTGGTTCCCCAGGTTCACGCCCGTGCGCTGCATTTGGCACTTAACTTGAGTGTGTTTGTTGGGTCTTCATTGATCAGAGCTTATGCCAGTTTAAGAGAGGAGGAGGCTTTTAGGCGAGTGTTTGATGATCTATTGGCAAAAGATGTCACATCTTGGAATGCTTTGGTTTCTGGTTATATGGAAGTGGGAAGTATGGATGGTGCACAAACAACCTTTGATATGATGCCTGAGAGAAACATAATTTCATGGACTACTTTGGTTAATGGTTATATCAGGAACAAGAGGATAAACAAAGCAAGATCTGTTTTTAACAAAATGAGTGAGAGGAATGTGGTGTCTTGGACGGTAATGATTAGTGGGTATGTGCAAAATGAGAGATTTATGGATGCATTGAAGCTTTTTCTACTGATGTTTAATTCAGGAACTCGTCCCAATCATTTCACGTTTTCAACTGTGTTGGATGCATGTGCTGGTTGTTCCTCTCTTTGGACAGGAAGTCAGGTGCACCTGTGGCTTATCAAGTCAGGCATACCAGAGGATGTTATCTCATTGACCTCGCTTGTGGATATGTATGCAAAATGTGGGGATATGGATGCAGCATTTCGTGTTTTTGATTCCATTCCGAATAGGAATTTGGTGTCATGGAATTCAATAATTGGTGGCTATGCCAGACATGGGCTAGCTACCCGAGCACTGGAGGAGTTTGATAGGATGAAAAAAGTTGGTGTTACACCAGATGAAGTTACTTTTGTAAATGTGTTGTCGGCGTGTGTGCATGCAGGTCTTGTTGAAGAAGGTGAAAAGCACTTCACTTCTATGTTGACCAAGTATGGAATCCAAGCAGAGATGGAACACTATACTTGCATGGTTGACCTCTATGGAAAATCAGGGCAATTTGATGAAGCAGTAAAATTGATCAAGGATATGCCATTTGAGCCTGACGTGGTGTTGTGGGGTGCATTGCTTGCAGCTTGTGGCCTGCATTCAAATTTAGAAGTTGGAGAGTATGCTGCAGAGAGGATCCGCAAACTGGAGAGCAATCATCCTGTTTCTTACTCAATTCTTTCAAAGATCCAAGGTGAGAAAGGAATATGGAGCAGTGTAAATGAATTGAGGGACATGATGAAGGAGAGACAAGTCAAAAAGCAGAAGGCATTGAGTAAGGTCTTTCTGTAA 1539 0.4276 MCTVTSAKLNYMIHAYIQDNSINNARKLFDENPSSRNLISWNLMMTGYVKHHQIEHAHFLFDQMPFKDAVSWNIMLSGFHKTANSDWLYHCFLQMGRAGVAPDDYTISTVLRAVISTELDVLVPQVHARALHLALNLSVFVGSSLIRAYASLREEEAFRRVFDDLLAKDVTSWNALVSGYMEVGSMDGAQTTFDMMPERNIISWTTLVNGYIRNKRINKARSVFNKMSERNVVSWTVMISGYVQNERFMDALKLFLLMFNSGTRPNHFTFSTVLDACAGCSSLWTGSQVHLWLIKSGIPEDVISLTSLVDMYAKCGDMDAAFRVFDSIPNRNLVSWNSIIGGYARHGLATRALEEFDRMKKVGVTPDEVTFVNVLSACVHAGLVEEGEKHFTSMLTKYGIQAEMEHYTCMVDLYGKSGQFDEAVKLIKDMPFEPDVVLWGALLAACGLHSNLEVGEYAAERIRKLESNHPVSYSILSKIQGEKGIWSSVNELRDMMKERQVKKQKALSKVFL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2323 512 Pfam PPR repeat 172 201 IPR002885 -
Aed2g2323 512 Pfam PPR repeat 406 430 IPR002885 -
Aed2g2323 512 Pfam PPR repeat 39 65 IPR002885 -
Aed2g2323 512 SUPERFAMILY TPR-like 167 428 IPR011990 GO:0005515
Aed2g2323 512 Gene3D Tetratricopeptide repeat domain 283 395 IPR011990 GO:0005515
Aed2g2323 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Aed2g2323 512 TIGRFAM PPR: pentatricopeptide repeat domain 407 431 IPR002885 -
Aed2g2323 512 TIGRFAM PPR: pentatricopeptide repeat domain 233 266 IPR002885 -
Aed2g2323 512 TIGRFAM PPR: pentatricopeptide repeat domain 202 233 IPR002885 -
Aed2g2323 512 TIGRFAM PPR: pentatricopeptide repeat domain 304 333 IPR002885 -
Aed2g2323 512 TIGRFAM PPR: pentatricopeptide repeat domain 334 368 IPR002885 -
Aed2g2323 512 TIGRFAM PPR: pentatricopeptide repeat domain 39 64 IPR002885 -
Aed2g2323 512 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 2 509 - -
Aed2g2323 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Aed2g2323 512 Gene3D Tetratricopeptide repeat domain 198 282 IPR011990 GO:0005515
Aed2g2323 512 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Aed2g2323 512 Gene3D Tetratricopeptide repeat domain 126 197 IPR011990 GO:0005515
Aed2g2323 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 37 71 IPR002885 -
Aed2g2323 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 433 IPR002885 -
Aed2g2323 512 Pfam PPR repeat family 230 278 IPR002885 -
Aed2g2323 512 Pfam PPR repeat family 332 379 IPR002885 -
Aed2g2323 512 Pfam PPR repeat family 67 114 IPR002885 -
Aed2g2323 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 331 IPR002885 -
Aed2g2323 512 Gene3D Tetratricopeptide repeat domain 396 468 IPR011990 GO:0005515
Aed2g2323 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Aed2g2323 512 Pfam E motif 449 505 IPR046848 -
Aed2g2323 512 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2323 Aed-Chr2 26557454 26558992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2323 48 508 Glycoside Hydrolase AT3G49170 33.399 1.85e-88 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2323 - - gmx:102665683 928.702