LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g2270	ATGGCCCCTTCCCGCCGCAACATCAATGGCCGATCACCCCTCGTCAATCAACAGAGTCAAATCACTGCCTTCTTCTCCAAATCCGCTTCCAATTCTCCCACCCTCTCCAAAACAAACCCTAACCCCAACCATAGTCCTACACCTGCTACTCCCTCACCTCTCAATCCCAAACTGCCCAAGCCCCGTCTTGTAATTGGCGCTTCCGCTTCTCCACCCTCCGCCTCGCCTTCTCTCTACGCTCATGAGGTCGTTGGCCGAAGGGTCAAGGTTTATTGGCCATTGGACAAAGCCTGGTACGAAGGCTCCGTCAAATCCTTCGACACCCTCACCTCCAAGCACGTCGTTCGTTACGAAGATGACGAGGAGGAATCCCTCGACCTCTCTAAAGAGAAGATCGAGTGGCTCCAGGATTCCTCTTCCAAGAAACTTAAACGCCTCCGTCGCGGCATCCCCACCGTTAGGAAGATGGTGATTGACGACGATGACGACGAAGAACTAGTAGAAGAAGAAAGTCATCTAGGAGAAGAAGATGATGATGATGATTCCAATGACGAAGATTGGGGGAAGAATGCTGTATTGGAGGATGCTGGGGACGCTGAAGAAGATACGGATTTAGAGGATGAAAACGACGACGTAGCAGAGAAGGCTAAAGGGAAGAGAGTTGAGCCTAAAAAGCGGAAACTAAGTGAAACAGAGAAACAAGAGCCAGCGAAAAAGAGCAAGACCGGAGTGGAAGTTAGTAATGGGCCTTTCAAGCTCTCAGTGTTGGAGCCTACGACTAATTTGGAGATTAAAGAGACATCTAAGGGTACTGACAATGTTGCGATTACTGAGGCCTCTGAAAGATTTGCATTGCGTGATGCTCAGAAGTTGCGCTTCCTGAAAGTAGATCGCAGGGATGCCAAGCGAAGGCGACCAGGGGATGAAAATTATGATTCAAAAACTCTCTATTTGCCTCCTGATTTCTTAAGGAGTTTGTCAGATGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGTGCGAAAGAGCTTGACTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAGAATTTCTCAGTGAACTTGGAGAAACTGGCTAGGAAGGGTTATCGAGTTCTTGTTGTGGAGCAGACTGAAACACCTGAACAGTTGGAGCTTCGTCGCAAGGAGAAGGGATCGAAAGATAAGGTTGTAAGGCGTGAGATATGTGCTGTGGTTACAAAAGGTACTTTAACAGATGGGGAGTTGCTGTCAGCAAACCCTGAAGCTGCATATTTAATGGCCCTGACCGAGCATCATGAAAATCACCCAAATGAAATTTCAGAGCATATCTATGGTGTTTGTATAGTTGATATTGCCACAAGTAGAGTCATTCTTGGACAGTTTAAGGATGACTTTGAGTGCAGTGCCTTGTGCTGTATCTTATCTGAGATCAGGCCAGTTGAAATTGTGAAACCTGCTAAACTACTCAGTGCTGAAACGGAGAGAGTACTGTTGAAGCATACCAGAAATCCTTTAGTGAATGAATTAGTTCCAATTGTGGAATTCTGGGATGCTGACAAAACTGTGGACCAATTAAAGAGAATTTATGGGAACACTAATGATTGTGTTAAAGATAATGAGTTAGATTGCCTGCCAGATGTTTTATTGGAGCTGGTGAAAACAGGTGATGGCAGTAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTATCTGAGACAGGCTTTTCTAGATGAAAGTTTGCTTAGATTTGCACAGTTTGAGTTACTTCCATGTTCTGGTTTTGGTGATCTTGCTTCAAAACCCTACATGGTTCTTGATGCGGCTGCTCTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGATTCTTCCGGTACGCTCTATGCCCAACTAAACCAATGTGTTACTGCTTTTGGGAAGAGATTGCTAAAGACTTGGCTTGCAAGACCATTAAGTCATGTGGAGTCAATTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCTTATGCACTAGAATTTCGAAAAGAACTATCCAAACTACCCGACATGGAGCGGTTGCTTGCACGCATCTTTTCCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTGATTCTGTATGAGGATGCATCTAAGAAGCAGCTGCAAGAGTTTATTTTAGCTCTGCGTGGTTGTGAACAGATGGCACAAGCATGCTCTTCACTCGGTGTCATTTTGAATCACATCAAATCTAGACAACTTCATCATCTGTTAACACCGGGTAAAGGTCTTCCCGATGTTTGTGTGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCTGGGCGTATAATACCTCATGAAGGAGTTGACTCAGAGTTTGACTCAGCCTGTAAGGCAGTTAAAGAGATTGAGTCCAGTTTATTGAAGCATCTCAAGGAACAAAGGAAACTACTTGGAGGCACATCAATTACTTATGTCAACATTGGAAAGGATACATACCTATTGGAAGTGCCAGAAAATTTGTGTAAGAATATTCCTCGAGATTATGAACTGCGCTCATCCAAAAAAGGCTTCTTTAGATACTGGACTCCAGATATTAAAACTTTTTTAAGAGAGCTCTCGCAAGCTGAATCCGAAAAGGAGTCCTTGTTGAAAAGTACATTGCAGAGATTAATTGGGCGTTTTTGTGAACATCACACTAACTGGAAGCAGTTGGTGTCTGCAACTGCAGAACTGGATGTCTTGATCAGTTTAGCAATTTCCTGTGACTACTATGAAGGACCAACATGCAGACCTAGTTTTGTAGGCACATTATGTACAAAAGAAGCTCCTTACCTCCATGCTAAAAGTTTGGGACACCCAGTCCTTAGGAGTGATACCTTAGGCAAGAGTGCCTTTGTACCCAATGACATAACCATTGGTGGTTCAGATCATGCTAGCTTTATTCTTCTAACAGGTCCTAACATGGGTGGAAAGTCAACTCTTCTTCGTCAAGTTTGCTTGACTGTGATTTTGGCCCAGGTAGGAGCTGATGTCCCAGCAGAAACCTTTGATCTGTCACCTGTTGACCGGATTTTTGTTCGAATGGGGGCCAAAGATAATATAATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACTATGCTGTCATCAGCCACTCGTAATTCATTGGTGGCTCTGGATGAACTTGGGCGAGGGACTGCAACTTCTGATGGACAAGCCATTGCGGAATCAGTATTAGAACATCTTGTGCGGAAGGTGCAGTGTCGTGGATTGTTTTCTACCCACTATCATCGACTAGCTGTAGATTATCTCAAAGATCCCAAGGTTTCTCTCTGCCACATGGGATGCCAAGTTGGTGGTGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTTACCCCTGGTGCTTGCCCCAAGAGCTATGGACTTCCAACATCTGTGCTTCAGAAGGCTGCTGCCAAGTCCAGAGAATTTGAGGCCAGTTATGGTAAATGCAGAAAGGTGTCTTCTGTAACAGACTCTCCCAATAAAAAATGGGTTGATGAGATAGCAGTTATCATCCAAAAATTGAACAACGCTGCTACAAATTTGAGTTGCCTGGAAACCATTTGCGTTGGTTCCCTAAGTGAACTTCAGGATAAAGCAAGAGAACTAATGCAGCGATGTTAA	3795	0.4408	MAPSRRNINGRSPLVNQQSQITAFFSKSASNSPTLSKTNPNPNHSPTPATPSPLNPKLPKPRLVIGASASPPSASPSLYAHEVVGRRVKVYWPLDKAWYEGSVKSFDTLTSKHVVRYEDDEEESLDLSKEKIEWLQDSSSKKLKRLRRGIPTVRKMVIDDDDDEELVEEESHLGEEDDDDDSNDEDWGKNAVLEDAGDAEEDTDLEDENDDVAEKAKGKRVEPKKRKLSETEKQEPAKKSKTGVEVSNGPFKLSVLEPTTNLEIKETSKGTDNVAITEASERFALRDAQKLRFLKVDRRDAKRRRPGDENYDSKTLYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGDQPHCGFPEKNFSVNLEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALTEHHENHPNEISEHIYGVCIVDIATSRVILGQFKDDFECSALCCILSEIRPVEIVKPAKLLSAETERVLLKHTRNPLVNELVPIVEFWDADKTVDQLKRIYGNTNDCVKDNELDCLPDVLLELVKTGDGSRSALSALGGALYYLRQAFLDESLLRFAQFELLPCSGFGDLASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLSHVESIKERQEAVAGLKGVNLPYALEFRKELSKLPDMERLLARIFSSSEASGRNANKVILYEDASKKQLQEFILALRGCEQMAQACSSLGVILNHIKSRQLHHLLTPGKGLPDVCVDLNHFKDAFDWVEANNSGRIIPHEGVDSEFDSACKAVKEIESSLLKHLKEQRKLLGGTSITYVNIGKDTYLLEVPENLCKNIPRDYELRSSKKGFFRYWTPDIKTFLRELSQAESEKESLLKSTLQRLIGRFCEHHTNWKQLVSATAELDVLISLAISCDYYEGPTCRPSFVGTLCTKEAPYLHAKSLGHPVLRSDTLGKSAFVPNDITIGGSDHASFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAETFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTATSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAVDYLKDPKVSLCHMGCQVGGGIAGLDEVTFLYRLTPGACPKSYGLPTSVLQKAAAKSREFEASYGKCRKVSSVTDSPNKKWVDEIAVIIQKLNNAATNLSCLETICVGSLSELQDKARELMQRC	1264

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed2g2270	1264	SUPERFAMILY	DNA repair protein MutS, domain III	636	958	IPR036187	-
Aed2g2270	1264	Pfam	MutS domain I	330	442	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	SUPERFAMILY	DNA repair protein MutS, domain I	315	438	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	235	1225	-	-
Aed2g2270	1264	Gene3D	-	799	930	-	-
Aed2g2270	1264	Pfam	MutS domain V	1018	1189	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	977	1198	IPR027417	-
Aed2g2270	1264	MobiDBLite	consensus disorder prediction	210	240	-	-
Aed2g2270	1264	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	235	1225	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Aed2g2270	1264	Gene3D	DNA repair protein MutS, domain I	286	446	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	Gene3D	MutS, connector domain	451	627	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	Coils	Coil	901	921	-	-
Aed2g2270	1264	Pfam	MutS domain II	453	604	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	PIRSF	Msh6	2	1245	IPR017261	GO:0006298\|GO:0030983
Aed2g2270	1264	SMART	DNAend	653	994	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	Gene3D	-	965	1234	IPR027417	-
Aed2g2270	1264	MobiDBLite	consensus disorder prediction	153	246	-	-
Aed2g2270	1264	MobiDBLite	consensus disorder prediction	161	185	-	-
Aed2g2270	1264	Coils	Coil	1250	1264	-	-
Aed2g2270	1264	MobiDBLite	consensus disorder prediction	26	43	-	-
Aed2g2270	1264	Gene3D	-	633	954	-	-
Aed2g2270	1264	Gene3D	-	80	133	-	-
Aed2g2270	1264	MobiDBLite	consensus disorder prediction	26	78	-	-
Aed2g2270	1264	SUPERFAMILY	DNA repair protein MutS, domain II	448	648	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	MobiDBLite	consensus disorder prediction	44	58	-	-
Aed2g2270	1264	SUPERFAMILY	Tudor/PWWP/MBT	83	123	-	-
Aed2g2270	1264	Pfam	MutS domain III	639	954	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	SMART	mutATP5	1014	1198	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Aed2g2270	1264	SMART	TUDOR_7	80	138	IPR002999	-
Aed2g2270	1264	Pfam	MutS family domain IV	823	914	IPR007861	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g2270	Aed-Chr2	26206271	26215707	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g2270	K08737		-	gmx:100811104	2188.69

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed2g2270	2	26206271	26215707	Aed2g2270	2	26206271	26215707	ECH