Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2196 ATGGCTGTGGTTGCAGTGCAGCAATGCCTGTGCTTCTCAGAATCAAATTGGAGGAATATAACAAAGCCATGTATTCCCTCTCACAGTTCAATTCTTCTACATTCACGCAAAAGGATTCAATATTCTCTGATTTCATACTCTTCTTCATCACAGACCCCAGAAGCTGATACTCAAACTGCTGAATCTTGCGTTAATTTGGGTCTTGAGCTCTTCTCCAAAGGAAGGGTTAAAGATGCTTTAGCCCAGTTTGAAACAGCACTTTCCTTGAACCCTAATCCAGTGGAGGCCCAAGCTGCGTACTACAACAAAGCTTGCTGCCATGCATACAAGTATAATGTTTCTTCTTCTTTTTACACAATTTTCAGTAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAAGGAATACAGCCTAAAATTTGGAACAATTCTCAATGATCCCGACTTGGCCTCCTTTAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCCAGGCTAGGTGGGGAAGATATCGGCTATGGTTTTCGACGAGATCTAAAACTTATTAGTGAAGTCCAGGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCACTGACAGCAGCTGCAGGAATATCATTGCTTTTTACTGTGCCCAGGCTATTTCGTGCAATTAGTGGTGGTGATGGTGCTCCTGATCTCTCGGCAACTGCTGGGAATGCTGCCATTAATATTGGAGGTATTGTTGTTCTTGTGGCATTATTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGTGTAGTTGAACTTGTGCAGCTACGGGATACAGTTCGACCAGTTATATTGGCAGGAAAAAAGGAAACAGTATCTTTGGCTATGCAAAGAGCAGAGAGATTTCGAACTGATCTCCTTAGACGTGGTGTTCTGTTAGTTCCTGTTATCTGGGGAGAAGGTCAGGAAACAAAAGTTGACAAAAAAGGTTTTGGTCTAAAGCCAAAGGCTGCTGAAACTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGGGCACAGTCCATAACTGCAAAATCAAAGTTGAAATCTGAAATTAGGTTCAAGGCTGAGGTTGTATCACCAGTGGAATGGGAACGGTGGATACGAGATCAGCAGAAGTCTGAAGGAGTTTCACTTGGTGAAGATGTGTACATAATACTTCGCTTAGATGGACGGGTTCGAAGATCAGGGAAGGGTGTGCCTGATTGGCAGCAAATTGTGAAGGAGCTACCACCAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1356 0.4307 MAVVAVQQCLCFSESNWRNITKPCIPSHSSILLHSRKRIQYSLISYSSSSQTPEADTQTAESCVNLGLELFSKGRVKDALAQFETALSLNPNPVEAQAAYYNKACCHAYKYNVSSSFYTIFSRGEGKKAADCLRTALKEYSLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALTAAAGISLLFTVPRLFRAISGGDGAPDLSATAGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSLAMQRAERFRTDLLRRGVLLVPVIWGEGQETKVDKKGFGLKPKAAETLPSIGEDFEKRAQSITAKSKLKSEIRFKAEVVSPVEWERWIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKGVPDWQQIVKELPPMEAFLSKLER 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2196 451 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 34 451 - -
Aed2g2196 451 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 34 451 - -
Aed2g2196 451 Pfam Low psii accumulation1 / Rep27 181 258 IPR021883 -
Aed2g2196 451 ProSiteProfiles TPR repeat profile. 60 93 IPR019734 GO:0005515
Aed2g2196 451 SUPERFAMILY TPR-like 54 114 IPR011990 GO:0005515
Aed2g2196 451 SMART tpr_5 60 93 IPR019734 GO:0005515
Aed2g2196 451 Gene3D Tetratricopeptide repeat domain 45 159 IPR011990 GO:0005515
Aed2g2196 451 Pfam Tetratricopeptide repeat 60 92 IPR013105 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2196 - - gmx:100784188 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2196 2 25783553 25787265 Aed2g2196 2 25783553 25787265 ECH