Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2192 ATGAGGGCTGCGAATGCGATTGGTGTTCTGCTTCAGGAATTTTGCCATAGTCGGAATCAGGTTCGTGAGATTCAAGCGCAACTGATCCTCCAGAAGATCTACACAAACACGAGAATCGCGGAGCAGTTCATCGGCGCGTGCGAATCACGGGGCCTTCTGAAGTCCGCTCTTGTTCTCTTCACCACCCTCCTCCCCCATCCCCACGTCTACACATTCAACACTCTCATCAGAGCCTTTTCCCAATCCCAAACCTCTCTCTTGATATACACCCACATGCTCCGCAACTCCGTCCTCCCCAACAACTTCACCTTCCCGCCACTCTTCAAGTCCCTCTCCGAAACGCAAGCACAATGCCTCCACTCCCACGTCCTCAAACTCGGCCACCACCAAGACCTCCACGTCCTCAACTCCCTCCTCCACGTCTACGCCTCGTGCCGCCACGTGTCGCTCTGTCGCCGCCTGTTCGACGAAACGCCTCACAGGGATGTCGTGTCCTGGAGCGTGCTGATCACGGGGTACAACAACGCTGGCAGCTACGACGATGCCTTGGTTGTCTTAGAACAGATGCAGTATGCGGGTGTCGTGCCTAATAGGGTCACCATGATAAACGCGTTGCACGCCTGTGCTCACTCTGGGAACATTGAAATGGGGGCGTGGATACACCGCGTCATCGAGATGGAGGGTTGGGAATTGGATGTGAAACTGGGGACGGCGTTGATTGACATGTATGCCAAGTGTGGGAGAGTGGAAGAGGGGTTGAGTGTTTTCTGGAATACCAAAGAGAAGAATGTGTTTGCTTGGAATGCAGTTATTAAAGGACTAGCTTTGACCAAGAGTGGACAAGAAGCAATTTGGTGGTTTAACAGAATGGAGAAGGATGGTGTTAGAGCGGATGAAGTGACTTTGCTGGCGGTTTTATCTGCGTGCAGTCACTCGGGTTTGGTGGACAAGGGTCGAGAGATTTTTGGTTTCTTGGTTGATGGGAGATATGGCTTTTGTGCTAATGTTAAACACTATGCTTGTATGGTTGATGTGTTGGCGCGTTCTGGGCGTTTGAAAGAAGCTGTTGAGTTCATGGAATGTTGTATGCCCTTCGGACCCACCAAGGCTATGTGGGGATCGTTGTTGGTTGGTTCCAAATCTCAGGGTGACTTGGACTTGGGCCTGCTAGCGGCTGGAAAGCTCATTGAATTGGAGCCGGAGAACACTGCTTATTATGTTCATCTCTCGAATCTTTATGCGGCAATGGGAAGATGGAGCGATGTTGAGAAAGTGAGAGGGTTCGTGAAGGATAGGCAACTCACCAAGGACTTGGGGTCTAGTTCTCTCGAGCTAGAGGTACAACACCACAGGCCTGTTGCTCATCTTTTGGCATAG 1377 0.5142 MRAANAIGVLLQEFCHSRNQVREIQAQLILQKIYTNTRIAEQFIGACESRGLLKSALVLFTTLLPHPHVYTFNTLIRAFSQSQTSLLIYTHMLRNSVLPNNFTFPPLFKSLSETQAQCLHSHVLKLGHHQDLHVLNSLLHVYASCRHVSLCRRLFDETPHRDVVSWSVLITGYNNAGSYDDALVVLEQMQYAGVVPNRVTMINALHACAHSGNIEMGAWIHRVIEMEGWELDVKLGTALIDMYAKCGRVEEGLSVFWNTKEKNVFAWNAVIKGLALTKSGQEAIWWFNRMEKDGVRADEVTLLAVLSACSHSGLVDKGREIFGFLVDGRYGFCANVKHYACMVDVLARSGRLKEAVEFMECCMPFGPTKAMWGSLLVGSKSQGDLDLGLLAAGKLIELEPENTAYYVHLSNLYAAMGRWSDVEKVRGFVKDRQLTKDLGSSSLELEVQHHRPVAHLLA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2192 458 SUPERFAMILY TPR-like 173 422 IPR011990 GO:0005515
Aed2g2192 458 Pfam PPR repeat family 161 209 IPR002885 -
Aed2g2192 458 Pfam PPR repeat family 262 310 IPR002885 -
Aed2g2192 458 PANTHER - 7 448 - -
Aed2g2192 458 Pfam E motif 384 442 IPR046848 -
Aed2g2192 458 TIGRFAM PPR: pentatricopeptide repeat domain 164 197 IPR002885 -
Aed2g2192 458 Pfam PPR repeat 339 360 IPR002885 -
Aed2g2192 458 Gene3D Tetratricopeptide repeat domain 112 227 IPR011990 GO:0005515
Aed2g2192 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Aed2g2192 458 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 448 - -
Aed2g2192 458 Gene3D Tetratricopeptide repeat domain 237 452 IPR011990 GO:0005515
Aed2g2192 458 Gene3D Tetratricopeptide repeat domain 5 111 IPR011990 GO:0005515
Aed2g2192 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2192 Aed-Chr2 25765162 25766538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2192 47 451 Glycoside Hydrolase AT3G49170 29.227 1.80e-54 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2192 - - gmx:102664320 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2192 2 25765162 25766538 Aed2g2192 2 25765162 25766538 ECH