Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2139 ATGCGAAGAGCAAGAAATATGAGACCAAACATCGTTTCTGAGGCAGGGTTGCCTACTAGGATGAGTCAATGGTGGGAAAGCATACCATTTCTCACTTCTGCAGTGGTGGTTGTTTGTGGAGTCATTTACCTGGTTTGTCTTCTGGTTGGATATGATTCCTTCTACGAGGTTTGCTTCTTGCCGTCTGCGGTAGTGTCACGGTTTCAAGTTTACAGGATTTATACCTCCATTCTTTTCCATGGTTCACTGCTTCATGTTGTCTTCAACATGATGGCTTTAGTTCCCTTGGGCTCTGAGCTGGAGAGGATCATGGGCTCAGTTCGCTTGCTTTATGTCATTATTTTGGTGGCTACAAGCAATGCCATATTCCATGTTCTCATAGCACTGCTGGTGGCGCACAATCCTTTACTTACATATGATTACCTCATGAATGAGTGTGCGATAGGCTTCTCAGGAGTTCTATTTTCAATGATTGTTATAGAGACAAGCTTGAGTGGAGTTCAATCGAGGAGTGTGTTTGGATTGTTTAATGTGCCTGCCAAGTGGTATGCATTCTTTTTGTTGTGTTCCAGCTTCTCATGCAAAATGTCTCATTACTTGGACACCTTTGTGGCATTTTATCTGGGTTTGCATATACATATGGCTTGTTTAATTTCCTCATACCTGGGACATCTTTTTATTCTTCCATTGAATCCTCCTCTTGGCTTGCGTCCAAAATTTATTGTTTGCACTGGTGGAAATCCTTTGGGTTATATTCCTACACATACAAGCCAAAATTCAACAACCAGTGGATTATTTTCTGGAAATATTTGGAGGAACCTATCATCATTGATGCCTCAAAGGGAAGTGTCTACTCAGTCAACTGAGGACAGTAGATTCCCTGGGAGGGGAAGGTCCCTTGGTTCTGGTCAAGGTCAAACTGCTTCTCATCTTCATTCAGATTCAAACCTTCAAGCTAGACTTTTGGAGGATAGCAGTCCCAATAGACCTTTAGATTCATCCACTCCTAGTAATACTCAACAGTTGTCAGAAGGAAGGCATTCAGTTGACAATGTAGCTACAGCAACTGCTGGTGTTCCACAGCATCAGGGTGCAGTTGTTTCGGAAGAAGGGATTAAAAAACTTGTATCAATGGGCTTTGATAGGACACAAGTGGAAGTGGCGCTGGCAGCTGCTGATGGTGATCTCAACGTGGCAGTGGAAATACTCATGAGCCAGCAGAGAATGGCTCTAATGCCAGCCTGTGAGGGATCAGTAAAACTTATATTCAATTTGCAAAAAGACACAACATCTGGGGTTACAACTTAA 1308 0.4281 MRRARNMRPNIVSEAGLPTRMSQWWESIPFLTSAVVVVCGVIYLVCLLVGYDSFYEVCFLPSAVVSRFQVYRIYTSILFHGSLLHVVFNMMALVPLGSELERIMGSVRLLYVIILVATSNAIFHVLIALLVAHNPLLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLCSSFSCKMSHYLDTFVAFYLGLHIHMACLISSYLGHLFILPLNPPLGLRPKFIVCTGGNPLGYIPTHTSQNSTTSGLFSGNIWRNLSSLMPQREVSTQSTEDSRFPGRGRSLGSGQGQTASHLHSDSNLQARLLEDSSPNRPLDSSTPSNTQQLSEGRHSVDNVATATAGVPQHQGAVVSEEGIKKLVSMGFDRTQVEVALAAADGDLNVAVEILMSQQRMALMPACEGSVKLIFNLQKDTTSGVTT 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2139 435 SUPERFAMILY Rhomboid-like 26 193 IPR035952 -
Aed2g2139 435 MobiDBLite consensus disorder prediction 281 312 - -
Aed2g2139 435 MobiDBLite consensus disorder prediction 324 347 - -
Aed2g2139 435 CDD UBA_At3g58460_like 369 404 - -
Aed2g2139 435 Pfam UBA/TS-N domain 369 403 IPR015940 -
Aed2g2139 435 PANTHER DER1-LIKE PROTEIN, DERLIN 10 407 - -
Aed2g2139 435 SMART DUF1751_2 61 163 - -
Aed2g2139 435 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 366 406 IPR015940 -
Aed2g2139 435 PANTHER RHOMBOID-LIKE PROTEIN 15 10 407 - -
Aed2g2139 435 Gene3D - 22 229 IPR035952 -
Aed2g2139 435 Pfam Rhomboid family 66 199 IPR022764 GO:0004252|GO:0016021
Aed2g2139 435 SUPERFAMILY UBA-like 361 407 IPR009060 GO:0005515
Aed2g2139 435 SMART uba_6 368 405 IPR015940 -
Aed2g2139 435 Gene3D - 334 410 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2139 - - gmx:100805745 643.269