Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2001 ATGGCAGGGGCGGAGATTAGCGACGGGAGCGGGAGGAGTGGAAGGGAACTAGCGGCGGGAACTAGCGATAATAACGGTTTTGCGGAAGTTGCAGACTCTAGAAGAAGCTCCTCTGCTGCTGGTGTTATTGAAGGGAACGACAGCGTTTCTTATGCCAACGTCTTGCGTTCTAGGAACAAGTTTGTCGATGCTCTTGCCATCTACGAGCGTGTGTTGGAGACTGATGCTGCAAATGTAGAGGCCCTCATTGGAAAGGGAATATGCTTTCAGATGCAGAATAAGGGAAGACTTTCGTATGAGAGTTTTTCTGAGGCTATCAAGCTGGATCCTCACAATGCTTGTGCTCTCACGCATTGCGGTATTCTGCACAAGGACGAGGGTTGCCTTGTGGAGGCTGCTGAGTCATATCAGAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTGCTGAATGCCTTGCCATTGTTTTAACAGATATTGGTACCAACATAAAGCTGGCAGGAAACACTCAGGATGGAATTCAAAAATATTTTGAAGCCCTCAAAGTAGATCCGCACTATGCTCCTGCATACTATAACCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACATGGCCCTCAGTTTCTATGAAAAGGCTGCATCAGAGAGGCCTATCTATGCTGAAGCATATTGCAATATGGGTGTGATTTTTAAAAATCGTGGTGATTTGGAAATGGCTATTTCTTGTTATGAGAGGTGTTTAACTGTTTCACCTAACTTCGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATCTGGGAACAAAGGTTAAATTGGAGGGGGACATCAATCGAGGTGTGGCATTGTATAAGAAAGCTTTGTATTACAACTGGCATTATGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTATGAACTTGCCTTTCACTTCAATCCACATTGTGCGGAAGCCTGTAACAATCTTGGAGTTATATATAAAGATCGTGAAAACCTGGATAAAGCTGTAGAATGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCATTAAATAACCTTGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATTATTGCAAATCCAACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGTGATATAGCTCAAGCAATTAATGCTTATGAGCAATGTCTTAAGATTGATCCTGATTCTCGAAATGCTGGCCAGAATCGTTTGCTTGCAATGAATTACATAGAGGAAGGACATGATGGCACACTTTTTGAGGTTCACAGGGACTGGGGTAGGCGATTCATGAGACTATATCCACAGTACACATCCTGGGACAACTCAAAAGATCCTGAACGGTCACTTGTGATAGGATATGTATCTCCTGATTATTTTACTCATTCTGTGTCATATTTCATAGAAGCACCCCTTGTCTATCATGACTACAACAATTTCAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATGCAAAAACCATTAGATTTAGAGAGAAAGTGTTAAATAAGGGTGGTATCTGGAAAGATGTTTATGGAGTTGATGAAAAGAGGGTTGCCAGCATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTCACTGGTCATACCGCAAACAATAAATTGGGAATGATGGCATGTCGACCTGCACCAATTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACTGATTCACTGGCAGACCCTCCTGAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTAGATTGCCAGAATGCTTCCTTTGTTACACCCCTTCCCCAGAGGCTGGTCCTGTTTGTTCAACTCCAGCTCTTTCCAATGGTTTTGTCACATTTGGTAGTTTCAACAATCTTGCCAAGATTACACCAAAAGTATTACAGGTTTGGGCGAGGATACTGTGTGCAATTCCGAATTCCCGCCTTGTGGTAAAATGTAAACCATTTTGCAGTGATAGTGTGCGACAGAGATTCCTTTCAACACTAGAGCAGTTAGGTTTAGAACCACTACGTGTTGATCTTCTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCCTATTCTCTGATGGACATCAGTTTGGATACATTTCCATACGCTGGAACAACAACAACATGTGAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGTTCAGTGCATGCACACAATGTTGGTGTTAGTCTTCTTAGCAAAGTTGGACTGGAGCATTTGATTGCAAGAAATGAAGATGAATACGTTGAATTGGCTAAGCATTTGGGCTCAGACATTTCCGCACTACAAAAATTGAGAATGAGTCTGCGAAATCTGATGTCCAAGTCCCCCCTGTGTGATGGTGCAAAATTTATGCAAGGTCTAGAGTCAGCATACAGAAATATGTGGCACAGGTATTGCAGAGGAGATGTTCCCTCTTTGAAACGCATGGAATTGTTACAAGAAGTTGCTGCTGCTGCTGAGCTGTCAAATAAGAATTCTGAGGCAACAAGGATTGCAAACTCAAGGGAGGACAGTCCTCCTGGATCTGTGAAGGCCAATGGATTTATTACAAAGATTAATACAGAGTTGTGA 2715 0.4192 MAGAEISDGSGRSGRELAAGTSDNNGFAEVADSRRSSSAAGVIEGNDSVSYANVLRSRNKFVDALAIYERVLETDAANVEALIGKGICFQMQNKGRLSYESFSEAIKLDPHNACALTHCGILHKDEGCLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALSFYEKAASERPIYAEAYCNMGVIFKNRGDLEMAISCYERCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINRGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIAQAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDGTLFEVHRDWGRRFMRLYPQYTSWDNSKDPERSLVIGYVSPDYFTHSVSYFIEAPLVYHDYNNFKVIVYSAVVKADAKTIRFREKVLNKGGIWKDVYGVDEKRVASMVREDQVDILVELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSPEAGPVCSTPALSNGFVTFGSFNNLAKITPKVLQVWARILCAIPNSRLVVKCKPFCSDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDEYVELAKHLGSDISALQKLRMSLRNLMSKSPLCDGAKFMQGLESAYRNMWHRYCRGDVPSLKRMELLQEVAAAAELSNKNSEATRIANSREDSPPGSVKANGFITKINTEL 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2001 904 ProSiteProfiles TPR repeat profile. 331 364 IPR019734 GO:0005515
Aed2g2001 904 SUPERFAMILY TPR-like 262 365 IPR011990 GO:0005515
Aed2g2001 904 Pfam Tetratricopeptide repeat 399 431 IPR001440 GO:0005515
Aed2g2001 904 Pfam Tetratricopeptide repeat 331 364 IPR001440 GO:0005515
Aed2g2001 904 Pfam Tetratricopeptide repeat 188 218 IPR001440 GO:0005515
Aed2g2001 904 Pfam Tetratricopeptide repeat 222 255 IPR001440 GO:0005515
Aed2g2001 904 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Aed2g2001 904 Pfam Tetratricopeptide repeat 367 392 - -
Aed2g2001 904 ProSiteProfiles TPR repeat profile. 113 146 IPR019734 GO:0005515
Aed2g2001 904 ProSiteProfiles TPR repeat profile. 365 398 IPR019734 GO:0005515
Aed2g2001 904 SUPERFAMILY TPR-like 343 798 IPR011990 GO:0005515
Aed2g2001 904 ProSiteProfiles TPR repeat region circular profile. 222 254 - -
Aed2g2001 904 ProSiteProfiles TPR repeat region circular profile. 331 363 - -
Aed2g2001 904 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Aed2g2001 904 SUPERFAMILY TPR-like 47 271 IPR011990 GO:0005515
Aed2g2001 904 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Aed2g2001 904 Gene3D Tetratricopeptide repeat domain 155 290 IPR011990 GO:0005515
Aed2g2001 904 Gene3D Tetratricopeptide repeat domain 297 369 IPR011990 GO:0005515
Aed2g2001 904 ProSiteProfiles TPR repeat profile. 188 221 IPR019734 GO:0005515
Aed2g2001 904 SMART sel1 399 430 IPR006597 -
Aed2g2001 904 SMART sel1 188 219 IPR006597 -
Aed2g2001 904 SMART sel1 331 362 IPR006597 -
Aed2g2001 904 SMART sel1 297 328 IPR006597 -
Aed2g2001 904 MobiDBLite consensus disorder prediction 1 30 - -
Aed2g2001 904 Gene3D Tetratricopeptide repeat domain 45 154 IPR011990 GO:0005515
Aed2g2001 904 ProSiteProfiles TPR repeat region circular profile. 188 219 - -
Aed2g2001 904 MobiDBLite consensus disorder prediction 874 894 - -
Aed2g2001 904 Gene3D Glycogen Phosphorylase B; 649 824 - -
Aed2g2001 904 SMART tpr_5 331 364 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 45 78 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 154 187 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 399 432 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 188 221 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 79 112 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 263 296 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 222 255 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 365 398 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 113 146 IPR019734 GO:0005515
Aed2g2001 904 SMART tpr_5 297 330 IPR019734 GO:0005515
Aed2g2001 904 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 38 858 - -
Aed2g2001 904 ProSiteProfiles TPR repeat profile. 222 255 IPR019734 GO:0005515
Aed2g2001 904 MobiDBLite consensus disorder prediction 874 888 - -
Aed2g2001 904 Gene3D Tetratricopeptide repeat domain 370 451 IPR011990 GO:0005515
Aed2g2001 904 ProSiteProfiles TPR repeat region circular profile. 399 431 - -
Aed2g2001 904 Gene3D - 469 648 - -
Aed2g2001 904 Pfam Glycosyl transferase family 41 472 635 IPR029489 -
Aed2g2001 904 Pfam Glycosyl transferase family 41 652 834 IPR029489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2001 Aed-Chr2 24468094 24478593 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2001 207 895 Glycosyltransferase AT3G11540 64.151 0.0 896
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2001 K09667 - gmx:100785784 1647.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2001 2 24468094 24478593 Aed2g2001 2 24468094 24478593 ECH