Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2000 ATGGATTCTATTGAAGTTAATAACTTGAGCATGCAAAGCCATACAGAGTCGACAAAGCAATGCGGCGTCCACACCTACGTTGCTCAGTGGCCAATTTCCTCTCTAGCATGGTCAATGCGGCGAGACAAAAGCCCGCGCTTTGCCATCGGTAGTTACTTGGAAGATTACAGCAACAAGGTCGAGCTTGTCCACTTCAACCACGACACGTTCAACTTCACCACCGACCCACGTCTGGTCCTCGACCACCCTTACGCACCAACAAACATCATGTTCTTCCCCTCCGAGGACGACACGAATCCCGACCTCGTCGCCACGTCAGGCGACAACCTAAGACTGTGGGAAATCCACGAAGACCACATCCAACTGAAGTCCCCTCTAGTTGGGAACAAAGTCAGCGACCACTCCGCTATTACCTCGTTTGACTGGGCCGTGTTTGACACCCGTCTCGTAGCAACTTCCAGCGTGGACACAACATGCACCATTTGGGACATTGAGAGGGAAGTCATGAAGGCACAGCTAGTGGCACATGACAAAGAGGTGTATGACATTTCTTGGGGAGGGTTTAACGTGTTTGCTTCCGTGTCGGGTGACGGTTCCGTTAGAGTGTTTGATTTAAGATACAAGGAAAAATCGACGATAATATATGAGAATCCGGTGCAGGATTGTTGTCCTTTGCTTCGTTTGGAATGGAATAAAAGTGATCCAAGGTTCATGGCGACGGTTGGACTGGACAGCAACAAGGTGGTGATATTGGATATTAGGGTACCAACGACACCGTTTATGGAGTTGAGTAAACATAGGACGTGTGTTAATGGTATGTCATGGTCCCCAGATTCTGGACGACATTTGTGCTCTGTTAGTGATGATGCAAGGGCCCTTATTTGGGAGGTGATGGACACAGGGATTAATGGTTGTGAAGCAGATGTGGAGCCTGTGATGTGGTACGGTTCATCTGCTGAAATCAACCATGTGCGTTGGTCCCCGGTGCAAATGGATTGGATTGCACTTACTTTCTTGAACAACTTACAGCTACTCAAAGTGTAG 1044 0.4856 MDSIEVNNLSMQSHTESTKQCGVHTYVAQWPISSLAWSMRRDKSPRFAIGSYLEDYSNKVELVHFNHDTFNFTTDPRLVLDHPYAPTNIMFFPSEDDTNPDLVATSGDNLRLWEIHEDHIQLKSPLVGNKVSDHSAITSFDWAVFDTRLVATSSVDTTCTIWDIEREVMKAQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRYKEKSTIIYENPVQDCCPLLRLEWNKSDPRFMATVGLDSNKVVILDIRVPTTPFMELSKHRTCVNGMSWSPDSGRHLCSVSDDARALIWEVMDTGINGCEADVEPVMWYGSSAEINHVRWSPVQMDWIALTFLNNLQLLKV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2000 347 SMART WD40_4 73 114 IPR001680 GO:0005515
Aed2g2000 347 SMART WD40_4 215 252 IPR001680 GO:0005515
Aed2g2000 347 SMART WD40_4 124 163 IPR001680 GO:0005515
Aed2g2000 347 SMART WD40_4 256 296 IPR001680 GO:0005515
Aed2g2000 347 SMART WD40_4 166 204 IPR001680 GO:0005515
Aed2g2000 347 SUPERFAMILY WD40 repeat-like 31 341 IPR036322 GO:0005515
Aed2g2000 347 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Aed2g2000 347 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Aed2g2000 347 Pfam WD domain, G-beta repeat 132 163 IPR001680 GO:0005515
Aed2g2000 347 PANTHER WD REPEAT CONTAINING PROTEIN 16 347 IPR045159 -
Aed2g2000 347 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Aed2g2000 347 PANTHER WD REPEAT-CONTAINING PROTEIN LWD1-LIKE 16 347 - -
Aed2g2000 347 Gene3D - 12 344 IPR015943 GO:0005515
Aed2g2000 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 297 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2000 Aed-Chr2 24456059 24457102 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2000 K11805 - qsu:111996771 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2000 2 24456059 24457102 Aed2g2000 2 24456059 24457102 ECH