Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1980 ATGGCGATGAAGAAGTTGCAGTTGCTGAAAGGGAATCCATTGACAAAACCAAAACCCCCTTCTTATGACCTCCCTCTCCCTTCCCCGCCACAAGACACACCCGTGTCCCCCGTCCACTACGGCCGGTTCCTGGATTTCCTAAAAGCCCACTGGGCCCCACCGCTGAGCCCGGAGAGCCTCCTCCAGTTCCTGAAATCGAAGCTCCATCACCACCCCTCCTTCTCTCACTTCGACTTCCACCTCTTCACATGGGCCTCCACCCTCGACTCCTTCCGCCACACCCACGCCACCTTCCACTGGATGGCCCGCTCCCTCGCCGCCACCCACCGCCTCCCCGAGCTCCGAACCCTCCTCCACTTCATCGCCGCCAACCCCTGCCCCTGCTCCCCCTCCATCTTCTCCTGCCCCCACACCCAACCAATCTTCCACAACGCCATCCACGCCTTCTCCAAATCCTCCAATCTCCACCACGCCGTCTCCGCGTTCCACTCCATGTGCAAACTCATCGACGGCAAACCAAACGTCGCCGTTTGCAACATCCTCATCCACGCCTTCGTCAAACGCGGTTCCCAAACTACCGCCCTCGATTTTTACCGCGACATGGTGGTCAAACATAGGGTCAATCCCGATGTTTATACTTTTAACATCTTGATTAGTGGCTATTGCCGGAACTCGCAGTTCGAATTGGCGTTGGAGATGTTCCGCGAGATGGGGGAAATGGGATGTCACCCCAATGTGGTTACTTTTAATACGTTGATTAAGGGGATGTTTAGAGAGGGGAAGGTTGAGGAACCCGTTGGGATGGCTCGCGAGATGGTTCAATTGGGGATTCGGTTTTCGAGTGTTACTTGTGAGATTTTGGTGCAAGGGCTTTGTAAGGAAGGGAGGGTTTTGCAGGCGTGTGAGCTGTTGAGGGAGTTTTGTGCCAAGGGGGTTTTGCCTGAAGGGTTTGATTGTTTTGCGCTGGTGGAGGTTTTGTGTGGGGAAGGGTATGTTATGAGAGCCTTAGAGGTTGTTTTTGAGTTGTGGAGTGGGGGGAGTGTGCCGAGTTTGGTTGCTTGTATTGTCATGGTTGATGGGTTGAGGGGGTTGGGGAAGATTGAGGAGGCGAGGGGGTTTGTGGAAAGGATGCTTGAAGAGGGTATGGTGCTGGATGTTGTCACTTTCAATTGTGTTCTTCGGGATATTTGTGATGCGCGGAGGACCAATGAGGCGGATAGATTGAGGTTACTTGCTTTGAGCAAGGGTTTGGAACCGGATGATATGACGTATCGGATTTTGGTTATGGGGTATATGGGAGAGGGAGGGAGAGAGCAGGGAGAGGTGCTGGTGAATGAGATGTTGGATAGGGGGTTTATACCTGATCTTGCTTCATATAATCAATTGATGAGTGGATTGTCTAATTGCCAACAATGCCCTACATGTGCCCAACTTTATTTCCCATCAATGCAGCTTCCATGCTGCCTCTTCGGATGCATTAGATGTGGCCCGGGTGAAAATGGAGCTGGATTCTGCAATCTTCTCGATGGGATTTCTGCCGATAGAGCAAAGATGTTTCTTCGCAAAGTTAGGATTCCATGA 1581 0.5231 MAMKKLQLLKGNPLTKPKPPSYDLPLPSPPQDTPVSPVHYGRFLDFLKAHWAPPLSPESLLQFLKSKLHHHPSFSHFDFHLFTWASTLDSFRHTHATFHWMARSLAATHRLPELRTLLHFIAANPCPCSPSIFSCPHTQPIFHNAIHAFSKSSNLHHAVSAFHSMCKLIDGKPNVAVCNILIHAFVKRGSQTTALDFYRDMVVKHRVNPDVYTFNILISGYCRNSQFELALEMFREMGEMGCHPNVVTFNTLIKGMFREGKVEEPVGMAREMVQLGIRFSSVTCEILVQGLCKEGRVLQACELLREFCAKGVLPEGFDCFALVEVLCGEGYVMRALEVVFELWSGGSVPSLVACIVMVDGLRGLGKIEEARGFVERMLEEGMVLDVVTFNCVLRDICDARRTNEADRLRLLALSKGLEPDDMTYRILVMGYMGEGGREQGEVLVNEMLDRGFIPDLASYNQLMSGLSNCQQCPTCAQLYFPSMQLPCCLFGCIRCGPGENGAGFCNLLDGISADRAKMFLRKVRIP 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1980 526 MobiDBLite consensus disorder prediction 1 30 - -
Aed2g1980 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Aed2g1980 526 PANTHER ATPASE EXPRESSION PROTEIN 3 21 470 - -
Aed2g1980 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Aed2g1980 526 Gene3D Tetratricopeptide repeat domain 78 269 IPR011990 GO:0005515
Aed2g1980 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Aed2g1980 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Aed2g1980 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Aed2g1980 526 Gene3D Tetratricopeptide repeat domain 411 508 IPR011990 GO:0005515
Aed2g1980 526 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 21 470 - -
Aed2g1980 526 Pfam PPR repeat family 209 257 IPR002885 -
Aed2g1980 526 Gene3D Tetratricopeptide repeat domain 344 410 IPR011990 GO:0005515
Aed2g1980 526 Gene3D Tetratricopeptide repeat domain 270 343 IPR011990 GO:0005515
Aed2g1980 526 TIGRFAM PPR: pentatricopeptide repeat domain 177 210 IPR002885 -
Aed2g1980 526 TIGRFAM PPR: pentatricopeptide repeat domain 354 386 IPR002885 -
Aed2g1980 526 TIGRFAM PPR: pentatricopeptide repeat domain 247 278 IPR002885 -
Aed2g1980 526 TIGRFAM PPR: pentatricopeptide repeat domain 212 246 IPR002885 -
Aed2g1980 526 TIGRFAM PPR: pentatricopeptide repeat domain 282 314 IPR002885 -
Aed2g1980 526 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Aed2g1980 526 Pfam PPR repeat 282 312 IPR002885 -
Aed2g1980 526 Pfam PPR repeat 356 381 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1980 145 511 Glycosyltransferase AT1G05670 19.624 6.52e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1980 - - gmx:100796880 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1980 2 24299774 24301851 Aed2g1980 2 24299774 24301851 ECH