Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1921 ATGGTGTTGGTAAGTAGTAGTAGTAGTAGTAGTAGATGGCAGCAGCCATGCCTCCACCTCCACTGCAGCAAATCCTTAAACTCTTGTTCCCTTTCTCCATCCAAACCACCATCCTCCTCCATCTCACTCCGCCATGCCACTCACCCGGAGTCCCACGCGCTTCTCCACGCCCTCCACGTGTCATCCCGCTGCAGCGACACCCACCTCGCCAAGACCGTCCACGCCACGCTCCTCAAACGCGACGACGACGACGAGGACCAAGACACCCACACCCACCTCTCCAACGCCCTCATCTCCACTTACCTCAAACTCAACCTCTTCCCCCACGCTCTCCGCGTCTTCCTCACCCTCCCTTTACCCAACGTCGTCTCCTACACCGCCCTCATCTCCTTCCTCTCCAAAAAGTCCAACCGCGAGCGCCACGCGCTCCAACTCTTCCTCCGCATGACGCGCTCCCACGTCCTTCCCAACGAGTACACTTACGTCGCCGTTTTGACCGCCTGCGCAAGACTCCTCCACTTCCAATTGGGCCTCCAGGTCCACGCCGCCGCACTCAAAACGGCCCATTTCGACTCCCCCTTCGTCGCTAACGCCCTCGTCTCTCTCTACTCCAAGCTCGCATCTTTCCACGTCGCGCTTCAACTCTTTAACCAAATACCACACAGGGACATTGCGTCATGGAACACTATTCTCTCCGCTGCGGTGCAGGACTCTTTATACGACACCGCGTTTCAGTTATTCCGTAGCATGCAGTCCACGGATGCGTTTAGAGTCGATGATTTCACTTTATCGATACTTTTGACCGCCTCTGCGTCATTGATGGAAGGTCAACAAGTTCACGCCCACGCTGTTAAACTAGGGTTAGAAACCGATTTGAACGTTGGGAATGGACTCATTGGCTTTTACACTAAATTTGGAACTGTTGATGATGTGGACTGGTTGTTTGAGGGGATGAGAGTCAGGGATGTTATAACTTGGACTCAGATGGTAACAGCGTATATGGAATTTGGGTTGGTGGATTTGGCGTTGAAGGTGTTTGGTGAAATGCCCGAGAAGAATTCGGTGTCATATAACACAGTTTTGGCTGGGTTTTGTCGAAATGAGGAAGGTTTAAAGGCGATGAGGTTGTTTGTCAAAATGGTGGAGGAGGGTTTGGAGTTGACGGATTTTAGTTTGACTAGTGTTGTTGATGCTTGTGGATTGCTTGGTGATTACAAGGTCAGCAAGCAGGTTCATGGGTTCGCTGTGAAGTTTGGGTTTGGATCGAATGCTTATGTTGAAGCTACGTTGCTTGACATGTACACCAGGTGTGGGAGGATGGTGGATGCTGAGAAGATGTTTTTGAGATGGGAGTTGGAGGAGTTTAGCTCTGTCATTTGGACGTCCATGATATGTGGCTATGCTAGGAATGGGCAACCGGAGGAGGCAATTTCTCTTTTCCATGTTGGTCGATCGGATGGGAAGGTTATTATGGATGAAGTTGCAGCGGCTTCAATGCTTGGTCTTTGTGGAACTGTTGGTCATCTTGATATGGGTAAGCAAATCCATTGCCATGTTGTTAAATGTGGCTTGGGATGTAATTTGGAAGTCGGAAATGCAGTTGTTAGCATGTATTTTAAGTGTGGGAGTGTGGATGATGCAATGAAGGTTTTCAATGATATGCCTTGTACTGATATAGTTACATGGAATACTTTGATTTCTGGCAATTTTATGCACAGACAGGGGGATAGAGCATTGGAAATATGGGTGGAAATGCTGGAGGAGGGCATAAAGCCTGATCAAGTTACATTTGTTTTGATAATCTCAGCTTACAGGCAAACTAACTTAAATTTGGTTGATGATTGTCGTAGTTTGTTTAATTCAATGAGAAATGTTTATCAAATTGAGCCCACATCCCAGCATTATGCTTCCTTCATCAGTGTTTTGGGTCACTGGGGTCTTCTGCAAGAAGCACTAGAAACTATCAATAACATGCCTTTCCAGCCTTCTGCTCTTGTTTGGCGCGCTTTGCTTGATGGTTGTAGATTGCATAAGAATGCAATGATTGAAAAATGGGCTGCTCAGAATATTCTGTCCCTAGAACCTAAAGATCCTTCAACGTTTATACTTGTTTCAAATTTGTATTCTGCTTCTGGGAGATGGGACCGCTCTGAAATGGTCAGGGAGGATATGAGAGAAAAGGGGTTTCGCAAACACCCAGCTCAAAGTTGGATCATTTGTGAGAAGAAAATAAATACATTTTATCAGAGAGATAGTTCACATCCACAGGAGAAAGACATACAGAGAGGTTTGGAAATTCTGATCTTGGAGTGCCTAAAAGTTGGATATGAACCTGACACGAGCTTTGTTCTCCACGAAGTAGAGGAGCATCACAAGAAAAATTTTCTATTCCATCACAGTGCTAAACTGGCAACAACTTATGGGATACTGATGACCAAGCCTGGAAAGCCCATTCGGATTGTAAAGAACATCCTTCTTTGTGGGGACTGCCATGGATTCTTAAAATGTGCATCTATTGTCACTAAGAGGGACATATTTCTGAGAGATTCTTCTGGATTTCATTGTTTCTCCAATGGCCAGTGCTCATGTAAAGACTTCTGGTGA 2604 0.4654 MVLVSSSSSSSRWQQPCLHLHCSKSLNSCSLSPSKPPSSSISLRHATHPESHALLHALHVSSRCSDTHLAKTVHATLLKRDDDDEDQDTHTHLSNALISTYLKLNLFPHALRVFLTLPLPNVVSYTALISFLSKKSNRERHALQLFLRMTRSHVLPNEYTYVAVLTACARLLHFQLGLQVHAAALKTAHFDSPFVANALVSLYSKLASFHVALQLFNQIPHRDIASWNTILSAAVQDSLYDTAFQLFRSMQSTDAFRVDDFTLSILLTASASLMEGQQVHAHAVKLGLETDLNVGNGLIGFYTKFGTVDDVDWLFEGMRVRDVITWTQMVTAYMEFGLVDLALKVFGEMPEKNSVSYNTVLAGFCRNEEGLKAMRLFVKMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNAYVEATLLDMYTRCGRMVDAEKMFLRWELEEFSSVIWTSMICGYARNGQPEEAISLFHVGRSDGKVIMDEVAAASMLGLCGTVGHLDMGKQIHCHVVKCGLGCNLEVGNAVVSMYFKCGSVDDAMKVFNDMPCTDIVTWNTLISGNFMHRQGDRALEIWVEMLEEGIKPDQVTFVLIISAYRQTNLNLVDDCRSLFNSMRNVYQIEPTSQHYASFISVLGHWGLLQEALETINNMPFQPSALVWRALLDGCRLHKNAMIEKWAAQNILSLEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRKHPAQSWIICEKKINTFYQRDSSHPQEKDIQRGLEILILECLKVGYEPDTSFVLHEVEEHHKKNFLFHHSAKLATTYGILMTKPGKPIRIVKNILLCGDCHGFLKCASIVTKRDIFLRDSSGFHCFSNGQCSCKDFW 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1921 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 352 IPR002885 -
Aed2g1921 867 Pfam E motif 677 738 IPR046848 -
Aed2g1921 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Aed2g1921 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Aed2g1921 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Aed2g1921 867 Gene3D Tetratricopeptide repeat domain 609 750 IPR011990 GO:0005515
Aed2g1921 867 Gene3D Tetratricopeptide repeat domain 484 608 IPR011990 GO:0005515
Aed2g1921 867 Gene3D Tetratricopeptide repeat domain 275 414 IPR011990 GO:0005515
Aed2g1921 867 Pfam PPR repeat 532 554 IPR002885 -
Aed2g1921 867 Pfam PPR repeat 458 481 IPR002885 -
Aed2g1921 867 Pfam PPR repeat 429 449 IPR002885 -
Aed2g1921 867 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 31 393 - -
Aed2g1921 867 PANTHER OS07G0172600 PROTEIN 31 393 - -
Aed2g1921 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Aed2g1921 867 Gene3D Tetratricopeptide repeat domain 175 274 IPR011990 GO:0005515
Aed2g1921 867 Gene3D Tetratricopeptide repeat domain 24 174 IPR011990 GO:0005515
Aed2g1921 867 Pfam DYW family of nucleic acid deaminases 775 867 IPR032867 GO:0008270
Aed2g1921 867 PANTHER OS07G0172600 PROTEIN 387 478 - -
Aed2g1921 867 PANTHER OS07G0172600 PROTEIN 470 853 - -
Aed2g1921 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 156 IPR002885 -
Aed2g1921 867 TIGRFAM PPR: pentatricopeptide repeat domain 324 353 IPR002885 -
Aed2g1921 867 TIGRFAM PPR: pentatricopeptide repeat domain 458 481 IPR002885 -
Aed2g1921 867 TIGRFAM PPR: pentatricopeptide repeat domain 532 559 IPR002885 -
Aed2g1921 867 TIGRFAM PPR: pentatricopeptide repeat domain 226 253 IPR002885 -
Aed2g1921 867 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Aed2g1921 867 TIGRFAM PPR: pentatricopeptide repeat domain 560 593 IPR002885 -
Aed2g1921 867 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 387 478 - -
Aed2g1921 867 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 470 853 - -
Aed2g1921 867 Pfam PPR repeat family 558 604 IPR002885 -
Aed2g1921 867 Pfam PPR repeat family 352 399 IPR002885 -
Aed2g1921 867 Pfam PPR repeat family 120 170 IPR002885 -
Aed2g1921 867 Pfam PPR repeat family 223 269 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1921 Aed-Chr2 23799036 23801639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1921 63 867 Glycoside Hydrolase AT3G49170 34.554 1.08e-149 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1921 - - gmx:100784704 1496.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1921 2 23799036 23801639 Aed2g1921 2 23799036 23801639 ECH