Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1899 ATGGTGAAGGCCTACCTCCGATACGAGCCGGCGGCGTCGTTCGGTGTGATAGCGTCAGTGGAATCCAACATCGCATTCGACAGCTCCGGCAAGCACCTCCTCTCTCCGGCGCTCGAGAAGATCGGCGTTTGGCACGTGCGCCAGGGCCTCTGCACCAAAACCCTAAATCCTTCCTCTTCGTCGCGCGGTCCATCCCTCGCCGTCACTTCCATCGCCTCCTCCACTTCCTCCCTGATTGCTGGTGGCTACGGTGACGGTAGCATAAGGATTTGGGACTCTGAAAAAGGAACGTGTGAGACTACCTTGAATGGACACAAGGGAGCTGTCACTGCTCTTCGTTACAACGAGTCTGGTTCCTTGCTCGCCTCTGGTAGCAAGGATAATGATGTTATTTTATGGGATGTTGTTGGCGAGACTGGGCTATTTCGCCTTCGCGGACATCGCGACCAGGTGACTGATGTTGTCTTCATGAGTTCTGGGAAAAAGCTTGTTAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATCTTGATACCCAGCACTGTATGCAAATTGTTGGTGGCCATCATAGTGAAATATGGTCCCTAGATGTTGATCTGGATGAAAGATATCTGGTCACTGGTTCTGCGGATAATGAACTTCGTTTTTATGCCATCAAGCATGAGTCTGTGGATGGGGAGTCTGTAAATGGAGGTGAAGAATCTTCCGTTGAAAACAAATGGGAAGTGTTGAGGCATTTTGGTGAAATTCAGCGGCAAAGTAAGGATAGAGTTGCAACAGTGCAGTTCAATAAGTCAGGAAGTCTGCTAGCTTGCCAAGTTGCTGGAAAGACAGTAGAAATATACCGTGTATTGGATGATGCTGAAGCAAAGCGCAAAGCAAAACGAAGGGTTCACCGTAAGAAAGAGAAGAAACATAGTAAAGAAGCTTTGGAGGGAATAGAAAATGGAGAAAAGAATAATGAGAACAAAGGAGCTGATTCTTCTGTCACTCATGGGCCCATAGAAAGTAGACACACAGTTACTGTGCCTGATGTTTTTAAGCTGTTGCATACTATCAGAGCTAGCAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACCCCAAAGAATTCACTAGCTAGTTTAGCATTGTCCCTGAACAATAATCTACTTGAGTTTTACTCCATTGAACAAGGAGAAACCAAAAACACACTTGGTATTGATCTTCAAGGGCACCGTTCTGATGTTAGAAGTGTCACGCTTAGTTCAGACAACAGTTTTCTGATGTCAACCAGTCACAATGCTGTAAAGATTTGGAACCCAAGTACTGGCTCTTGCCTAAGGACCATTGATTCTGGGTATGGACTATGCAGTTTAATTCTTCCCACCAACAAGTATGGACTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGCACTTGTGTTGAAGTAATGGAAGCTCATGGTGGTTCTGTACGCTCAATTGCTGCCTTACCACATAAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTGAAATTTTGGGAGTACCAAATTATGCAAAATCCTGGTCAAGCTGCTAAGCAACTCATTGTATCAAATGTCAATACCATGAAAATGAATGATGATGCTCTTGTGGTTGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTCTTGGATAGTACTGTGAAGGTTCACTTTGCAGACACATTCAAATTCTTCCTTTCATTATATGGCCACAAGCTGCCTGTACTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTAACTGGCTCTGCAGATAAAAATATAAAGATCTGGGGTTTGGACTTTGGTGACTGTCATAAATCCATCTTTGCGCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAGACACATTATGTATTCAGTGTTGGAAAAGATCGCCTAATAAAATATTGGGATGCTGATAAATTTGAGCTGCTGTTGACTCTTGAAGGACATCATGCTGATATTTGGTGTCTTGCAGTTAGCAATCGTGGTGATTTTATCGTTACTGGATCTCATGATCGTTCTATTCGCCGCTGGGATCGCACTGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATATTGACAATGCATTTGATAACAAGTATGCATCGAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTTCGGCAACTGACTTAATTATTGAGAGATTAGACATTGCAGAAGCTGAACAAAAGCGTATTGCAGAACATCAGGAGGAGAAAAATAACAGAAATGTTGCTGGTTTCCAAGCAAATCCGCTTATGAATGGGCTTTCACCTTCTGACTATCTTCTAAGTGCATTTTCAGATGTTCACTCCAATGATTTGGAGCAAACGTTATTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTGTCGTACTTGAAAGACTGGACCTCATATTCTGATAAGGTTGAGCTTGTTTGCAGAATAGGTACGCTGCTGTTGCAGACACATTACAACCAGCTTCTTTCCACGCCAGCTGCCCGACCTATCTTAACTGTTTTCAGTGACATTTTTTATGAAAGGGTCAAGGGATGGAAAGACATCTTTGGTTTTAACCTTGCTGCCATGGATCATATTCAGCAAATGATGGCTTCAAGATCGGATGCTCTCTTTCAAGATGCAAGATCAAAACTGCTAGAGATGCGTGCTCGCCAATCCAAACGTTTAGAAGAAAGATCTGATACTGGGGAAGTGAAGCGGAAGAAGAAGAAGACGACATAA 2835 0.4325 MVKAYLRYEPAASFGVIASVESNIAFDSSGKHLLSPALEKIGVWHVRQGLCTKTLNPSSSSRGPSLAVTSIASSTSSLIAGGYGDGSIRIWDSEKGTCETTLNGHKGAVTALRYNESGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFMSSGKKLVSSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSLDVDLDERYLVTGSADNELRFYAIKHESVDGESVNGGEESSVENKWEVLRHFGEIQRQSKDRVATVQFNKSGSLLACQVAGKTVEIYRVLDDAEAKRKAKRRVHRKKEKKHSKEALEGIENGEKNNENKGADSSVTHGPIESRHTVTVPDVFKLLHTIRASKKICSISFCPITPKNSLASLALSLNNNLLEFYSIEQGETKNTLGIDLQGHRSDVRSVTLSSDNSFLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILPTNKYGLVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSIAALPHKNGFVTGSADHDVKFWEYQIMQNPGQAAKQLIVSNVNTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLIKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADIDNAFDNKYASKEEIPEEGAVALAGKQTQETLSATDLIIERLDIAEAEQKRIAEHQEEKNNRNVAGFQANPLMNGLSPSDYLLSAFSDVHSNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELVCRIGTLLLQTHYNQLLSTPAARPILTVFSDIFYERVKGWKDIFGFNLAAMDHIQQMMASRSDALFQDARSKLLEMRARQSKRLEERSDTGEVKRKKKKTT 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 621 653 - -
Aed2g1899 944 Pfam Dip2/Utp12 Family 798 898 IPR007148 -
Aed2g1899 944 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 942 - -
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 695 IPR001680 GO:0005515
Aed2g1899 944 SUPERFAMILY WD40 repeat-like 62 286 IPR036322 GO:0005515
Aed2g1899 944 CDD WD40 403 695 - -
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 220 IPR001680 GO:0005515
Aed2g1899 944 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Aed2g1899 944 MobiDBLite consensus disorder prediction 923 944 - -
Aed2g1899 944 MobiDBLite consensus disorder prediction 305 322 - -
Aed2g1899 944 MobiDBLite consensus disorder prediction 293 337 - -
Aed2g1899 944 Pfam WD domain, G-beta repeat 478 515 IPR001680 GO:0005515
Aed2g1899 944 Pfam WD domain, G-beta repeat 403 434 IPR001680 GO:0005515
Aed2g1899 944 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Aed2g1899 944 Pfam WD domain, G-beta repeat 658 695 IPR001680 GO:0005515
Aed2g1899 944 Pfam WD domain, G-beta repeat 577 610 IPR001680 GO:0005515
Aed2g1899 944 Pfam WD domain, G-beta repeat 64 92 IPR001680 GO:0005515
Aed2g1899 944 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Aed2g1899 944 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 695 - -
Aed2g1899 944 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Aed2g1899 944 PRINTS G protein beta WD-40 repeat signature 598 612 IPR020472 -
Aed2g1899 944 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Aed2g1899 944 Gene3D - 446 647 IPR015943 GO:0005515
Aed2g1899 944 SUPERFAMILY Nucleoporin domain 349 700 - -
Aed2g1899 944 Gene3D - 648 711 IPR015943 GO:0005515
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Aed2g1899 944 SMART WD40_4 477 516 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 396 434 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 240 283 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 531 569 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 137 176 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 614 653 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 54 92 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 95 134 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 179 218 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 656 695 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 572 611 IPR001680 GO:0005515
Aed2g1899 944 SMART WD40_4 437 474 IPR001680 GO:0005515
Aed2g1899 944 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Aed2g1899 944 Gene3D - 335 445 IPR015943 GO:0005515
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 443 IPR001680 GO:0005515
Aed2g1899 944 Gene3D - 17 323 IPR015943 GO:0005515
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 613 - -
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 621 662 IPR001680 GO:0005515
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 516 IPR001680 GO:0005515
Aed2g1899 944 Coils Coil 285 305 - -
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Aed2g1899 944 CDD WD40 98 516 - -
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 620 IPR001680 GO:0005515
Aed2g1899 944 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 942 - -
Aed2g1899 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 484 516 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1899 576 704 Miscellaneous Gene Families AT5G08390 27.907 4.78e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1899 K14556 - gmx:100775810 1729.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1899 2 23600276 23608407 Aed2g1899 2 23600276 23608407 ECH