Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1876 ATGCGTCCAATCTCTCAGTCCTCTCCTTTTCGTCTTCATTCAGCTGCAAGCATCACCACCCTCCTCAAAGCCTGCAAGAGCAGTGAACACCTGGAGCAAGTGCACGCTTGCATCATCCATCGAGGCCTCGAGCAAGACCACTTCCTCATTTCCCTCTTCTTTTCCGCCAACACCCTCTCCTACTCCTACGCCTCCTCCGTCTTCCACCGCGTTCTCTCCCCTTCCACCTTCCTCTGGAACACCCTCATCAAATTCCACTGCCAAAAGAGTCTCTTTTCCCACACCCTCTCCGCCTTCGCTCGCATGAAGGCACATGGGGCTCTTCCCGATAGCTTCACCTACCCTTCTGTCATCAAGGCCTGTTCCAGTACGTGCAAGGCACGGGAAGGAAAGTCGCTTCATGGGTCCGCCTTCAGGTGCGGCGTCGACCAGGATCTCTACGTGGGCACCAGTTTGATCGACATGTACGGCAAGTGCGGGGAGATTGCTGATGCTCGCAAGGTGTTTGATGGATTGTCTGATAGGAATGTGGTTTCCTGGACTGCTATGCTTGTTGGGTACGTTGCTGCTGGCGATGTTGTGGAGGCCAGGAAGCTGTTTGATGAGATGCCTCGCAGAAATGTGGCGTCTTGGAACGCAATGTTGCAGGGTTTTGTCAAGGTGGGGGATTTGAGCAGTGCTAGAGGCGTGTTTGACGCAATGCCTGAGAAGAATGTTGTTTCTTTCACCACCATGATTGATGGGTATGCCAAGGCAGGTGACATGGCGGCCGCGAGGTTCTTGTTTGATCGTGCTCCAGAGAAGGATGTTGTTGCTTGGTCTGCTTTGATATCGGGTTATGTCCAGAATGGGCAGCCTAATCAGGCGTTGAGAGTGTTTCTCCAGATGGAATCTATGAATGTGAAACCTGATGAGTTCATATTGGTCAGCTTGATGTCGGCTTCTGCGCAGTTGGGTCATTTAGAACTGGCTCAATGGGTTGATTCTTATGTAAGCAAGAGCTGTATTGATCTTCAGCAGGACCATGTAACTGCAGCGCTTCTGGATATGAATGCAAAGTGTGGAAACATGGAAAGGGCGTTGAAATTGTTTGAGGAAAAACCTAAACGGGATATAGTCTTGTATTGTTCGATGATACAGGGGTTGTCAATTCATGGGCATGGAGAAGAGGCTGTGAATCTGTTTAACAGGATGCTGCTGGAAGGGCTAACCCCGGATGAGGTGGCCTTCACAGTCATTATAACAGCTTGTAGTCATGCTGGGCTAGTTGATGAGGGACGGAACTACTTCCAGTTGATGAAGCAAAAATACTGCATTAGTCCTTTGCCTGATCACTATGCATGTATGGTTGATCTTCTAAGCCGGTCAGGCCACATAAGGGATGCTTATGAACTTATAAACTTAATCCCTGGGGAGCCTCATGCAGGTGCCTGGGGTGCACTTCTTGGGGCATGTAAACTATTCGGTGATTCAGAGTTGGGAGAGATTGTTGCTAATCGACTTTTTGAGCTTGAGCCTCTAAATGCAGCTAATTATGTGCTGTTGTCTGACATCTATGCAGCAGCAGAGCGATGGATAGATGTTTGCCTTGTGAGAAGTAAGATGAGGGAAAGGAGAGTGCGGAAGATACCTGGTTCCAGTAAAATTAGTCCAGGACTGAGTTGTTCAGTGGTTCAAATGTCAATCCCTATTAGAATCACTCTTCAGGGGGCCCATGCAATGCTTGCAATGAGAATTTTGACTGAGAAAGAAGTCTATGTAAACCATGCTGAGTTAGACTGGCATCAAATGAGGACAGAATGGGTTGGTGGTGAATCAAAAAGATTACAGAGGCCACCTAAGGTTCAACTATAA 1854 0.4849 MRPISQSSPFRLHSAASITTLLKACKSSEHLEQVHACIIHRGLEQDHFLISLFFSANTLSYSYASSVFHRVLSPSTFLWNTLIKFHCQKSLFSHTLSAFARMKAHGALPDSFTYPSVIKACSSTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGLSDRNVVSWTAMLVGYVAAGDVVEARKLFDEMPRRNVASWNAMLQGFVKVGDLSSARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDRAPEKDVVAWSALISGYVQNGQPNQALRVFLQMESMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKSCIDLQQDHVTAALLDMNAKCGNMERALKLFEEKPKRDIVLYCSMIQGLSIHGHGEEAVNLFNRMLLEGLTPDEVAFTVIITACSHAGLVDEGRNYFQLMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELINLIPGEPHAGAWGALLGACKLFGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVCLVRSKMRERRVRKIPGSSKISPGLSCSVVQMSIPIRITLQGAHAMLAMRILTEKEVYVNHAELDWHQMRTEWVGGESKRLQRPPKVQL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1876 617 Pfam PPR repeat 346 369 IPR002885 -
Aed2g1876 617 Pfam PPR repeat 150 175 IPR002885 -
Aed2g1876 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Aed2g1876 617 Pfam PPR repeat family 74 122 IPR002885 -
Aed2g1876 617 Pfam PPR repeat family 268 306 IPR002885 -
Aed2g1876 617 Pfam PPR repeat family 206 251 IPR002885 -
Aed2g1876 617 Pfam PPR repeat family 371 418 IPR002885 -
Aed2g1876 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 268 IPR002885 -
Aed2g1876 617 PANTHER OS07G0578800 PROTEIN-RELATED 16 236 IPR045215 GO:0003723|GO:0009451
Aed2g1876 617 PANTHER OS07G0578800 PROTEIN-RELATED 227 547 IPR045215 GO:0003723|GO:0009451
Aed2g1876 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Aed2g1876 617 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Aed2g1876 617 TIGRFAM PPR: pentatricopeptide repeat domain 178 208 IPR002885 -
Aed2g1876 617 TIGRFAM PPR: pentatricopeptide repeat domain 240 271 IPR002885 -
Aed2g1876 617 TIGRFAM PPR: pentatricopeptide repeat domain 78 110 IPR002885 -
Aed2g1876 617 TIGRFAM PPR: pentatricopeptide repeat domain 210 239 IPR002885 -
Aed2g1876 617 TIGRFAM PPR: pentatricopeptide repeat domain 271 305 IPR002885 -
Aed2g1876 617 TIGRFAM PPR: pentatricopeptide repeat domain 408 436 IPR002885 -
Aed2g1876 617 Gene3D Tetratricopeptide repeat domain 175 237 IPR011990 GO:0005515
Aed2g1876 617 Gene3D Tetratricopeptide repeat domain 238 342 IPR011990 GO:0005515
Aed2g1876 617 PANTHER OJ991214_12.4 PROTEIN 16 236 - -
Aed2g1876 617 PANTHER OJ991214_12.4 PROTEIN 227 547 - -
Aed2g1876 617 Pfam E motif 489 549 IPR046848 -
Aed2g1876 617 Gene3D Tetratricopeptide repeat domain 343 570 IPR011990 GO:0005515
Aed2g1876 617 Gene3D Tetratricopeptide repeat domain 11 174 IPR011990 GO:0005515
Aed2g1876 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Aed2g1876 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Aed2g1876 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1876 Aed-Chr2 23461189 23464648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1876 19 552 Glycoside Hydrolase AT3G49170 32.374 2.06e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1876 - - gmx:100795649 1011.91