LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g1853	ATGATATCAAAGAGTAAAATGGAGGCAGAGACATTGAGTCCTAACCACCCTCCTCCTAGCTTTCTTCGTCAGTCACTTCCTTCTGTTGTACCTATGCTTCTGATTTCAACAGGATATGTTGACCCTGGAAAGTGGGTAGCGACTGTTGAAGGTGGTGCACGGTTTGGGTTTGATCTGATGGCTTTCGTGCTTATTTTCAATTTTGCTGCTATCTTCTGTCAGTACATATCTGCAAGGATTGGTGCAATTACAGGAAAAAATCTAGCTCAGGACATTGAGAAGGCAAAAATCCTAGGCCAGTTTGTTGCAGGTTTTGTATTGCTCTCTTTTGTACTTGGACTGCTTATCAATCAACCGGAAATTCCATTTTCCATGAATGGAATACCAACAACGTTGAGTGGGGAGAGTGCATTCGTGCTAATGAGTCTTCTAGGAGCAAATCTTGTACCTCACAACTTTTACCTTCATTCGTCTATTGTACAGTGGCATCAGGGATTGAAAAGCATTTCTAAGAATGCTCTGTGTCATAACCATTTTTTGGCCATATTATGTGTTTTCAGTGGTCTTTATTTGGTAAATAATATGCTGATGACCGCCTCAGCAAATGAGTTCTACAGTACAGGTCCTGTTCCGCTTACTTTTCAGGATGCATTGTCACCAATGGAACAGGTCTTACGTGGCCCAATAGCTCTGGTTGGGTTTTTGCTCATTTTGTTTCTTGCAAATCAAACCACAGCATTAACTTGGAGTTTAGGCGGAGAAGTAGTAGTGCATGGTTTCTTAAAATTGGATATACCGGGTTGGCTTCATTATGCTACAATTAGAGTGATTGCTGTTGTGCCTGCCCTTTATTGTGTCTGGAGTTCAGGAGCTGAAGGGATGTATCAGCTACTATTATCCACGCAAGTTTTGGTAGCTCTGCAACTTCCATCTTTTGTGATCCCCCTTTTTCGAGTTGCTACATCTAGATCAATAATGGGTGTACACAAGATTTCCCAGTTTCTGGAACTTTTGGCATTGATCATATTCATTGGGATGCTTGGCTTGAATATTGTCTTCGTTGTAGAAATGATATTTGGCAATAGTGATTGGGCGAGTGATTTGAGATGGAATGTGGGGAGTGGTGTGTCTGTCTCGTATTTAGTTCTTCTTACTGCTGCTTTTACATCGTTATGTTTGATGCTTTGGTTAGCCGCCACACCTTTAAGATCTGCTAGTGTCCAATTAGATGCTCAGACATGGAACTGGGATATGCCAGAGACTCGGCCAAATCCATCAGTTGTTGGTGAGGAATTGTATTTAACTGAAACAAAGTGTCCTGAAGATGTATCTAAGCATGTGCAGGAACCCACGCCAACTGTAGCAAAAATCTTGGAGTACACAGATGTATCACTTCCAAGTGTTCATCCTGATCTACCTGAATCTATAATGGAACCTGAACCCCATGTGAATGCTGTAAGGGATAATCATTCTATTGCATCGACTACCACATCAGAGTTAGAGGCAGTATCAACTATAGTTAATGAGATTTTGGATTCTTGTTTGGAAGACACCAAAACTATAACAATGGAAACAAATACCCCAACTGAGAAAACTGTGGAAGTTAAAGGAGATTCAAATGCTGAAAGGGATGATGATGATGGAGATTCATGTGAAGCTGAAGAAACTTCCAGAGTGGTATCAGCCAGTGTCCCATCTTCAGCCTCAGATGGCCCTGCATCATTCAGGAGTCTAAATGGCAAAAGTGATGAAGGAGGGAATAGCTTTGGAAGTCTTTTGAGAATAGAAGGCTTAGGGCGTGCAGCAAGGCGTCAGCTAGCTACTGTTCTTAATGAATTCTGGGGACAACTATATGATTTGCATGGACTAGTACCCAAGGAAGCAAAGGCTGAGAAAATTGCCCTTTTGCTGGGAGTGGGTGTAGATTCAAGACCCACCAGTTCCTTACAACAAGTGGATGCATGTGGAAAGGACTACTCTGAATACTTACTATCTATAGGAGGTAGAGCTCCTGCCACTTTAATGAACCCCACTTCATATGATTCTTCCAAGCAGCCTACAATGCGAAGTAATTCAGAGTCTTCTTATGGCCTTCAAAGGAGTTCTTCCTCAATGCGGGCAAATCCCATCCAATTATTGGATGCACATGTACAGAACTCTAGCCACAATATCCTTAATTCTGGTGAGAGGCGCTGTTCCAGTGTGCATAATCTACATTCATCTGAGGCTTGGGATTATCAACCAGCTACCATACATGGTTATCAGACTGCATCCTATCTTAGCCGGCTTGGTAAAGACAGAAATTCTGCTAACTTAAATGGTCAGGTGGACTTGTCATCACTGAAATCCCCTTCCATAGTTAATACAAAGTACAGGGATTCACTTGCATTTGCTTTGGGGAAAAGATTGCAAAGTGGCTCAAGTGTGGGCCAACCCCCAGGGTTCCCAAATGTAGCTGTCTCCAGAGATTGCCAATTACAATCTGAGAGGTCTTATTATGACTCTGGCTCTTCTGGATCTGCAGATAATACAGTCAATTCAGTTAATACTAAAAAGTACCACAGTTTGCCGGACATTTCAGGATACTCCATTCCCCTCAGGGCTGGTTATGTGTCTGATAAAAATGCTCCATGGGATGGTTCTGTTGGATATGGATCTTTTGCTAGTAGGACGTCTTATGATCAATCATCATATTCAAATTCTGGATCAAGAACAGGAGGTCATTTGGCCTTCAATGAACTTTCTTCATCTCAAGTTAACAACAAGGCACTCTCTTCACAGTTGAGTTCTGGTTTTGATACTGGATCCCTCCGGCCTAGACTGCCTTATGAGCAGTTTGGGGTAGCTGAGAAAATTCATAATGTTGCAAAGGAAGCTTTCGGAAATAGGCCTAATGCAATTGTTCAAGAAACTACTTCATTTGTGGATATAGAGGGGAAACTTCTTCAGTCTATAAGACTTTGCATTGTTAAGCTCTTAAAACTTGATGGGTCTGATTGGTTGTTTAGACAGAATGGTGGAGCCGATGAGGATCTGATAGAATCTGTTGCTGCAAGGGAGAAGTTGTTTTATGAAGTTGAATCCAGGGAGATGAATCAGGTCATTCATATGGATGAAACTCATTATTTTCCTCCTGATAGGAAATTTGGTTCTTCAATGAAGAATAATGAGGCACATTCTTCAGGTTTTTCAGTGTCTTCAGTTCCTAATTGCGGGAAGGGATGTATTTGGAGAACAGATTTAATAATAAGCTTTGGAGTGTGGTGCATCCACAGTATTCTTAACCTCTTACTTGTAGAAAGCCGGCCAGAGCTCTGGGGGAAATACACTTATGTTCTCAATCGCCTCCAGCAGGGAATCATTGATCCAGCATTCCTTAAGGCTCGTAGTCCCTTGGCTCCATGCTTTTGCCTTCAAGTTCAAAAAAAGTTAAGCCCCCCTCATCGGTCAAATGGGATGCTGCTACCCCCAACTACAAAACCAGGCCAGGGCAAATGCACAACCACAAGTGCATCAACGTTGCTTGAACTTATCAAGGACGTGGAGCTTGCCATCTCTAGCCGGAAAGGACGTACCGGAACTGCTGCAGGTGATGTGGCTTTTCCTATGGGGAAGGAAAACTTGGCATCTGTTCTCAAACGGTACAAACGGAGAGTCGAGCTGCCTAAAATCTTCTTAATTAATGATCATCCGAATTCCAAAGCCAAAGCATATTCTGTGTTGCAGACTGTGCTTCCTACTCTAACATCATCGGTAACAGGTATAAATAAAGTAAAGGTTTTCGAGTTGAGAAATGGTGTTCGAGTTGGTGATATCGTTGCCCTTAATATTGTTCATCTTGATATTGGCTTTGGTGTGTTACCTATTGGGCCGGGCTATGGGTCGACGAAAACAACAACAACTTGGCCCACCCGCTCCTCCACAACCACAACAGGTCTAACACACATTCACATAGTTTTGTCTTTGGGTAACATGGTGTTATCTACATATATAGTTGATGAAAGAAAAACTAGTGCCATGGTATATTCTTACTATTCATGA	4041	0.4219	MISKSKMEAETLSPNHPPPSFLRQSLPSVVPMLLISTGYVDPGKWVATVEGGARFGFDLMAFVLIFNFAAIFCQYISARIGAITGKNLAQDIEKAKILGQFVAGFVLLSFVLGLLINQPEIPFSMNGIPTTLSGESAFVLMSLLGANLVPHNFYLHSSIVQWHQGLKSISKNALCHNHFLAILCVFSGLYLVNNMLMTASANEFYSTGPVPLTFQDALSPMEQVLRGPIALVGFLLILFLANQTTALTWSLGGEVVVHGFLKLDIPGWLHYATIRVIAVVPALYCVWSSGAEGMYQLLLSTQVLVALQLPSFVIPLFRVATSRSIMGVHKISQFLELLALIIFIGMLGLNIVFVVEMIFGNSDWASDLRWNVGSGVSVSYLVLLTAAFTSLCLMLWLAATPLRSASVQLDAQTWNWDMPETRPNPSVVGEELYLTETKCPEDVSKHVQEPTPTVAKILEYTDVSLPSVHPDLPESIMEPEPHVNAVRDNHSIASTTTSELEAVSTIVNEILDSCLEDTKTITMETNTPTEKTVEVKGDSNAERDDDDGDSCEAEETSRVVSASVPSSASDGPASFRSLNGKSDEGGNSFGSLLRIEGLGRAARRQLATVLNEFWGQLYDLHGLVPKEAKAEKIALLLGVGVDSRPTSSLQQVDACGKDYSEYLLSIGGRAPATLMNPTSYDSSKQPTMRSNSESSYGLQRSSSSMRANPIQLLDAHVQNSSHNILNSGERRCSSVHNLHSSEAWDYQPATIHGYQTASYLSRLGKDRNSANLNGQVDLSSLKSPSIVNTKYRDSLAFALGKRLQSGSSVGQPPGFPNVAVSRDCQLQSERSYYDSGSSGSADNTVNSVNTKKYHSLPDISGYSIPLRAGYVSDKNAPWDGSVGYGSFASRTSYDQSSYSNSGSRTGGHLAFNELSSSQVNNKALSSQLSSGFDTGSLRPRLPYEQFGVAEKIHNVAKEAFGNRPNAIVQETTSFVDIEGKLLQSIRLCIVKLLKLDGSDWLFRQNGGADEDLIESVAAREKLFYEVESREMNQVIHMDETHYFPPDRKFGSSMKNNEAHSSGFSVSSVPNCGKGCIWRTDLIISFGVWCIHSILNLLLVESRPELWGKYTYVLNRLQQGIIDPAFLKARSPLAPCFCLQVQKKLSPPHRSNGMLLPPTTKPGQGKCTTTSASTLLELIKDVELAISSRKGRTGTAAGDVAFPMGKENLASVLKRYKRRVELPKIFLINDHPNSKAKAYSVLQTVLPTLTSSVTGINKVKVFELRNGVRVGDIVALNIVHLDIGFGVLPIGPGYGSTKTTTTWPTRSSTTTTGLTHIHIVLSLGNMVLSTYIVDERKTSAMVYSYYS	1346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed2g1853	1346	MobiDBLite	consensus disorder prediction	522	582	-	-
	Aed2g1853	1346	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	93	1124	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed2g1853	1346	PRINTS	Natural resistance-associated macrophage protein signature	270	287	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed2g1853	1346	PRINTS	Natural resistance-associated macrophage protein signature	242	261	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed2g1853	1346	PRINTS	Natural resistance-associated macrophage protein signature	140	163	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed2g1853	1346	PRINTS	Natural resistance-associated macrophage protein signature	302	321	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed2g1853	1346	MobiDBLite	consensus disorder prediction	1	20	-	-
	Aed2g1853	1346	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	21	90	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed2g1853	1346	PIRSF	EIN2	91	1241	IPR017187	GO:0009873
	Aed2g1853	1346	PIRSF	EIN2	7	98	IPR017187	GO:0009873
	Aed2g1853	1346	Pfam	Natural resistance-associated macrophage protein	45	94	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed2g1853	1346	Pfam	Natural resistance-associated macrophage protein	103	332	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed2g1853	1346	MobiDBLite	consensus disorder prediction	556	582	-	-
	Aed2g1853	1346	MobiDBLite	consensus disorder prediction	675	700	-	-
	Aed2g1853	1346	MobiDBLite	consensus disorder prediction	674	700	-	-
	Aed2g1853	1346	PANTHER	ETHYLENE-INSENSITIVE PROTEIN 2	93	1124	-	-
	Aed2g1853	1346	PANTHER	ETHYLENE-INSENSITIVE PROTEIN 2	21	90	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g1853	Aed-Chr2	23233960	23244702	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g1853	7	1234	Miscellaneous Gene Families	AT5G03280	46.979	0.0	1026

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g1853	-		K14513	gmx:100813034	1894.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed2g1853	2	23233960	23244702	Aed8g0447	8	3752074	3761839	PCT