Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed2g1812 | ATGGGGAAAATCCCTCCTTCGTTCCGCTCTGCAATCGCAAACCCCAACCTTCGAAACCCCTCTTCTCTGGTTCGTCCTCAACCCCCAAAGAAACAACAACAACAGCAACCTCGTCATCCCCGAAAACAACAACAGAAACAGCAAAACCCTTCTCTCCCTCTCTTCAAATCCCCAAACCTGGAAGACGCAAAGAAACTCTTCAACTCCATCGCCAACTCCTCCTCCGACCCTCGCTTTCCGAACTCCCTCCTCCACTCCTACGCAAAACTCGCCGCTACCCCTTCCGACTCCGTCAAATTCCTCAACCACATTACCAAAACCCTCCCTTCCTTCTCCCCCGACCACTCCACCTTTCACATCCTCCTCTCCCATTCATATTCCAATTCCAATTCCCATTCCCCCAATTCCACACTCTCCCCAATCCATCAAACCCTAAACTTAATGCTCGCCGCCGGCATCACCCCCGACACCGCCACAGCCGACGTCGCGGTCCGCTCCCTCTGCTCCGCAGGCCACCTCGACCACGCCGTCGAATTGATCAAGGACTTCGCCTCCAAGCACTGCCCACCCGACACCTACACCTTCAACTTCCTCGTCAAGCAACTCTCCAAGTCCCGAGCTTTGACCACTGTCTACGGCTTCATCGACGAAATGCGCGAAAAATTCAGCATTAAACCCGATCTTGTTACTTACACGATCCTGATTGACAATGTGTGTAATGGTAAGAATCTCAGAGAGGCCACGAGGCTGGTGAGTGTGCTCCATGAGGAGGGCTTCAAGCCTGATTGCTTTGTTTACAACACAATTATGAAAGGGTACTGTGTGTTGAGTAGAGGGAGCGAGGCGATTGAGGTTTATAACAAGATGAAGGAGGAAGGGGTGGAGCCTGATCTTGTTACTTACAACACTTTGATCTTCGGCCTGTCCAAATCGGGGAGGGTGACCGAGGCGAAGAAGCTCATTCGTGTGATGGCAGAGAAAGGCTATTTTCCTGATGAGGTGACTTATACTTCGCTGATGAATGGGATGTGCAGGAAGGGGGACGCGTTGGGGGCTCTCGTGTTGCTGGGGGAGATGGAGGCGAAGGGGTGTAGTCCGAATGAGTGCACGTATAACACGCTGCTGCACGGGTTGTGTAAGGCCCGGCTGGTGGATAAGGCCGTTGAGTTCTATGGGGTGATCAGGGCAGGTGGTTTGAAGCTTGATACGGCTTCTTATGGAACGTTTGTCAGGGCGCTGTGCAGGGATGGGAGAGTTGCCGAGGCTTATGAGGTGTTCGATTATGCCATTGAGAGCAAGAGCTTATCAGATGTTGCTGCTTACTCGACTTTGGAGACCACGCTTAAATGGCTCAAGAAGGCTAGGGAACAAGGGCTTGCTGTTTAA | 1386 | 0.5231 | MGKIPPSFRSAIANPNLRNPSSLVRPQPPKKQQQQQPRHPRKQQQKQQNPSLPLFKSPNLEDAKKLFNSIANSSSDPRFPNSLLHSYAKLAATPSDSVKFLNHITKTLPSFSPDHSTFHILLSHSYSNSNSHSPNSTLSPIHQTLNLMLAAGITPDTATADVAVRSLCSAGHLDHAVELIKDFASKHCPPDTYTFNFLVKQLSKSRALTTVYGFIDEMREKFSIKPDLVTYTILIDNVCNGKNLREATRLVSVLHEEGFKPDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEAKKLIRVMAEKGYFPDEVTYTSLMNGMCRKGDALGALVLLGEMEAKGCSPNECTYNTLLHGLCKARLVDKAVEFYGVIRAGGLKLDTASYGTFVRALCRDGRVAEAYEVFDYAIESKSLSDVAAYSTLETTLKWLKKAREQGLAV | 461 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed2g1812 | 461 | MobiDBLite | consensus disorder prediction | 12 | 55 | - | - | |
| Aed2g1812 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 402 | 436 | IPR002885 | - | |
| Aed2g1812 | 461 | Gene3D | Tetratricopeptide repeat domain | 219 | 326 | IPR011990 | GO:0005515 | |
| Aed2g1812 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 367 | 401 | IPR002885 | - | |
| Aed2g1812 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 332 | 366 | IPR002885 | - | |
| Aed2g1812 | 461 | Gene3D | Tetratricopeptide repeat domain | 327 | 460 | IPR011990 | GO:0005515 | |
| Aed2g1812 | 461 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 1 | 460 | - | - | |
| Aed2g1812 | 461 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 1 | 460 | - | - | |
| Aed2g1812 | 461 | TIGRFAM | PPR: pentatricopeptide repeat domain | 299 | 333 | IPR002885 | - | |
| Aed2g1812 | 461 | TIGRFAM | PPR: pentatricopeptide repeat domain | 334 | 368 | IPR002885 | - | |
| Aed2g1812 | 461 | TIGRFAM | PPR: pentatricopeptide repeat domain | 405 | 433 | IPR002885 | - | |
| Aed2g1812 | 461 | TIGRFAM | PPR: pentatricopeptide repeat domain | 369 | 402 | IPR002885 | - | |
| Aed2g1812 | 461 | TIGRFAM | PPR: pentatricopeptide repeat domain | 265 | 297 | IPR002885 | - | |
| Aed2g1812 | 461 | TIGRFAM | PPR: pentatricopeptide repeat domain | 229 | 263 | IPR002885 | - | |
| Aed2g1812 | 461 | Gene3D | Tetratricopeptide repeat domain | 54 | 218 | IPR011990 | GO:0005515 | |
| Aed2g1812 | 461 | Pfam | PPR repeat | 224 | 251 | IPR002885 | - | |
| Aed2g1812 | 461 | Pfam | PPR repeat | 398 | 427 | IPR002885 | - | |
| Aed2g1812 | 461 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Aed2g1812 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 297 | 331 | IPR002885 | - | |
| Aed2g1812 | 461 | Pfam | PPR repeat family | 331 | 380 | IPR002885 | - | |
| Aed2g1812 | 461 | Pfam | PPR repeat family | 261 | 310 | IPR002885 | - | |
| Aed2g1812 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 227 | 261 | IPR002885 | - | |
| Aed2g1812 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 262 | 296 | IPR002885 | - | |
| Aed2g1812 | 461 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 156 | 190 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed2g1812 | 108 | 444 | Glycosyltransferase | AT1G05670 | 26.706 | 1.86e-40 | 152 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed2g1812 | - | - | gmx:100782321 | 768.844 |