Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1610 ATGAATATGAATGGAATGCCAAAAAAGGCTAGTTCTAGTAGTGTGCCCAAATGGCACTCTTCTTCTGTCACAACCAAAATTGTGAATAACTTCAATCCTATATGCCAAGCTACCCAACAATTAACTCTCAAGGGAAAGTTTGTGATCACACACAATCATAGCAAATCAATACCTGGAAAGTACATTTCTGTTCAGATTTATAGTGGGACAGAGGTGGATCCTGAGACTGGTAAAGGGAAGTTGAGTGAGAAAGCATATTTTAAGCAGGGTGAGAGCACAATACATAGCCATGATGCACAAACCATAATATATAAAATCAAGATACATGTTGACTCAAATTTTGGAACTCCAAGAGCTTTTGTGATTCAAAACCAGCACAAGAAGTTCTACCTTCAGTCTGCATCTATTGAGACTAATGACCGGATCATTCACTTTGATTGCAATTCCTGGATATATCCAATCAAGAAGACCAAATCTGATAGACTCTTCTTCTCAAATAGATGCTGTCTTCCAAGTCACACACCAAGAGCACTAGTGGAACTAAGAAAGGAAGAGCTTGATAGATTGAGGGGTAATGGAATGGGAGAAAGAAAGGAATGGGATAGAATCTATGACTATGACTTCTATAATGACCTTGGTGATCCTGACAAAGGTCCAGAGCACCATAGACCTGTTCTTGGTGGCTCAAGGTTGTTTCCATATCCTCGTAGAGGAAGAACTGGTCGAAAACATAGTACAACAGGTCCATCATGTGAGAGCCGGCCACAACCAATGAACTTTGACATATATGTTCCATCAGACGAGAGATTTGGCCACAATAAATTGAAGGAGTTGAAATCAAATTGTGTGCATGCCATGGTACATTTTTTATCACCAAAGGAAGAACTATTACCAAGGCGAAATTCTGCTAACTTTCAATCATTGGATGAGTTACTTGACATGTTTTCTAGCAATAGGAATCAAACGATTGAGGGATGGATGAGAGACAACTTAAAGAAACTAATACCTGTTGAGCACTTACAGGAAATAACTCATGCAATCAAGGAAAATCAAGGGCAATTACCTATCCCTCAAATCATATCTGAAAATGAGTGGGCTTGGAAAGATGATATCGAGTTTGGACGACAAATGATTGCAGGAACTCACCCCACCAGAATCCAGTGCTTAAAGACATTCCCACCTCAAAACAAATTTGGAATACAGAGTTCAATAAAACAATCAATCATAGAACAGAAGCTAGAAGGATGGACACTTTCTCAGGCATTGGAACATGGAAGAATGTTCATGCTGGACCACCATGATTATCTCATTCCATATTTGAACAGAATAAATGCAAATGGGGTGTGTGCTTATGCATCAAGGACTCTGCTATTCTTAAGGAGTGATGGCATGCTTAAACCATTGACAATAGAACTTAGCTTGCCAGGGTCATCTCCTCACCTTGAAATCCATAGAGTTTTTTTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAGCTTGCTAAATCTCATGTTTTAGCTAATGATTCTGTTTACCATCAACTAATTAGCCATTGGTTATACACCCATGCAATTGTTGAACCCTTTATCATTGCCACCAAAAGAAGGCTTAGTGTTATGCATCCAATCCACCGGTTGCTGAATCCTCATTTCAAAGACACCATGCACATAAATGCTTTGGCAAGACTCATCCTTATAAACTCAGGAGGAATTTTCGAGAGAATATTATTTCCTGGCGAGATTTGTATGCAGATATCATGTGACCTCTACAAAGAGTGGAGATTCAATGAAGAAGGACTTCCTGCTGATCTACTCAAAAGGTACATCAGAAACCACATAATCTTCATTTACATGGTTTAA 1863 0.3929 MNMNGMPKKASSSSVPKWHSSSVTTKIVNNFNPICQATQQLTLKGKFVITHNHSKSIPGKYISVQIYSGTEVDPETGKGKLSEKAYFKQGESTIHSHDAQTIIYKIKIHVDSNFGTPRAFVIQNQHKKFYLQSASIETNDRIIHFDCNSWIYPIKKTKSDRLFFSNRCCLPSHTPRALVELRKEELDRLRGNGMGERKEWDRIYDYDFYNDLGDPDKGPEHHRPVLGGSRLFPYPRRGRTGRKHSTTGPSCESRPQPMNFDIYVPSDERFGHNKLKELKSNCVHAMVHFLSPKEELLPRRNSANFQSLDELLDMFSSNRNQTIEGWMRDNLKKLIPVEHLQEITHAIKENQGQLPIPQIISENEWAWKDDIEFGRQMIAGTHPTRIQCLKTFPPQNKFGIQSSIKQSIIEQKLEGWTLSQALEHGRMFMLDHHDYLIPYLNRINANGVCAYASRTLLFLRSDGMLKPLTIELSLPGSSPHLEIHRVFFPAKQGTQAALWQLAKSHVLANDSVYHQLISHWLYTHAIVEPFIIATKRRLSVMHPIHRLLNPHFKDTMHINALARLILINSGGIFERILFPGEICMQISCDLYKEWRFNEEGLPADLLKRYIRNHIIFIYMV 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1610 620 Gene3D - 511 614 - -
Aed2g1610 620 PRINTS Plant lipoxygenase signature 135 153 IPR001246 GO:0016491
Aed2g1610 620 PRINTS Plant lipoxygenase signature 451 475 IPR001246 GO:0016491
Aed2g1610 620 PRINTS Plant lipoxygenase signature 233 252 IPR001246 GO:0016491
Aed2g1610 620 PRINTS Plant lipoxygenase signature 161 182 IPR001246 GO:0016491
Aed2g1610 620 PRINTS Plant lipoxygenase signature 200 216 IPR001246 GO:0016491
Aed2g1610 620 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Aed2g1610 620 ProSiteProfiles PLAT domain profile. 42 165 IPR001024 GO:0005515
Aed2g1610 620 PANTHER LIPOXYGENASE 97 610 IPR000907 GO:0016702|GO:0046872
Aed2g1610 620 Pfam PLAT/LH2 domain 72 164 IPR001024 GO:0005515
Aed2g1610 620 PANTHER LIPOXYGENASE 97 610 - -
Aed2g1610 620 SUPERFAMILY Lipoxigenase 170 610 IPR036226 -
Aed2g1610 620 Gene3D - 385 510 - -
Aed2g1610 620 PRINTS Lipoxygenase signature 496 513 IPR013819 GO:0016702|GO:0046872
Aed2g1610 620 PRINTS Lipoxygenase signature 514 531 IPR013819 GO:0016702|GO:0046872
Aed2g1610 620 PRINTS Lipoxygenase signature 534 554 IPR013819 GO:0016702|GO:0046872
Aed2g1610 620 Gene3D - 188 291 - -
Aed2g1610 620 Gene3D - 294 383 IPR027433 -
Aed2g1610 620 MobiDBLite consensus disorder prediction 216 257 - -
Aed2g1610 620 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 168 620 IPR013819 GO:0016702|GO:0046872
Aed2g1610 620 Gene3D PLAT/LH2 domain 23 187 - -
Aed2g1610 620 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 53 167 IPR036392 GO:0005515
Aed2g1610 620 ProSitePatterns Lipoxygenases iron-binding region signature 2. 541 551 IPR020834 GO:0016702|GO:0046872
Aed2g1610 620 SMART LH2_4 41 166 IPR001024 GO:0005515
Aed2g1610 620 Pfam Lipoxygenase 178 610 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1610 Aed-Chr2 20240492 20246843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1610 59 610 Acyl Lipid Metabolism Gene Families AT3G22400 45.439 2.45e-170 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1610 K00454 - gmx:100797946 1162.52