Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1593 ATGGCTGGTCACTGGGGGATTCTTGTTTCAGATCCATGGCTTCAGAACCAGTTCACACAAGTGGAGCTTCGTAGCTTGAAGTCCCATTTCATGAGCATGAGGAGGGAGAGTGGGAGGCTTGTGATTGAGGATTTGGCTTCCAAGATGTCAAGGTTGAAGGTGGTGGGAGAGAATCTGAGTGAGGAAGAGAGAGCTTCTTGTGTGAAGGATTTGTATCAGAACACTGAAGAGGAGGTTGATTTTGAATTATTTCTTAAGGTCTACTTGAAACTCCAAACATTTGCAAATTCTAGAAGCGGAAGTAGTCCAAAGAACTCGTCGGCGTTCCTCAAGGCAGCTACAACCACATTGCTTCACACAATAAGTGAATCTGAGAAAGCATCATATGTAGCACATATAAATAACTATCTAGCAAAAGATGAGTTCCTCAAGAAATATCTTCCTATTGACCCTTCAACCAATGAGCTCTTTGAAGTTGCGAAAGATGGTGTTCTTCTTTGCAAGCTTATCAATGTGGCAGTTCCAGGGACCATTGATGAACGAGCTATCAATACGAAAAGAATACTCAATCCATGGGAAAGGAATGAAAATCACACACTTTGTCTCAACTCTGCTAAAGCAATTGGATGTACAGTAGTCAACATTGGAACTCAGGACTTCATTGAAGGACGGCGTCATCTGGTGCTTGGGGTGATTTCTCAGATTATTAAGATACAATTATTGGCAGACCTTGATTTGAAGAAAACTCCTCAACTTCTTGAGTTGCTTGATGATATTAAGGATATGGAAGAGTTGATGAATCTACCACCAGAAAAGATCTTGTTAAGGTGGATGAATTTCCATTTGAAGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAGGATGCTGAGGCTTATGCATACCTTCTAAATGTTCTTGCACCTGAATACACTAATCCCTCCACATTGGCAGTTAAAAATCCCTTTGAAAGAGCAAAGTGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCAATTGGAAGATTGCTAACAAGCCTCCAATTAAAATGCCATTTAGAAAAGTAGAGAACTGCAACCAAGTTGTGAAAATTGGGAAACAGCTTAAATTTTCACTGGTAAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAGTTAATACTAGCTTATTTGTGGCAATTGATGCGATACAACATCCTACAACTTCTCAAGAACTTGAGATTTCACTCTCGTGGGAAGGAAATAAATGATGCTGATATTTTAGAGTGGGCCAACAGCAAGGTTAGCTGCTCTGGAAGTCAAAGCCGCATGGACAGTTTTAAGGATAAAAGATTATCAGATGGAATATTTTTCCTTGAACTTCTAAGTTCAGTGCAACCCAGAGCTGTAAATTGGGGTCTTGTAACAAAGGGAGTAACCGCTTTGGATGATATTATGAAATTCTTCAAAAAAACATTGGCTTTATATTATGTGAATCAAAAAATGATCCTTACACTTACAGCTAGTATAATGTCTTGGTGCCTAAAGCACCCTCATGAAGAAAGGACAGTGATTGGAACTTCAGATAATGAGAGTGGGAATCAATTGGAGACTACATCAAATTCAACACTAGATGACTCTGCCTCTGATTCATCAGTAGATGAGAATGGGAACATGTAA 1686 0.3968 MAGHWGILVSDPWLQNQFTQVELRSLKSHFMSMRRESGRLVIEDLASKMSRLKVVGENLSEEERASCVKDLYQNTEEEVDFELFLKVYLKLQTFANSRSGSSPKNSSAFLKAATTTLLHTISESEKASYVAHINNYLAKDEFLKKYLPIDPSTNELFEVAKDGVLLCKLINVAVPGTIDERAINTKRILNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLDLKKTPQLLELLDDIKDMEELMNLPPEKILLRWMNFHLKKAGYKKIVTNFSSDVKDAEAYAYLLNVLAPEYTNPSTLAVKNPFERAKWVLLETLDKVSPGIVNWKIANKPPIKMPFRKVENCNQVVKIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHSRGKEINDADILEWANSKVSCSGSQSRMDSFKDKRLSDGIFFLELLSSVQPRAVNWGLVTKGVTALDDIMKFFKKTLALYYVNQKMILTLTASIMSWCLKHPHEERTVIGTSDNESGNQLETTSNSTLDDSASDSSVDENGNM 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1593 561 Gene3D - 416 514 IPR036872 -
Aed2g1593 561 PANTHER FIMBRIN/PLASTIN 1 334 IPR039959 GO:0051015|GO:0051017
Aed2g1593 561 Gene3D - 333 412 IPR036872 -
Aed2g1593 561 Gene3D - 119 245 IPR036872 -
Aed2g1593 561 Gene3D - 246 332 IPR036872 -
Aed2g1593 561 SUPERFAMILY Calponin-homology domain, CH-domain 121 513 IPR036872 -
Aed2g1593 561 CDD CH 269 406 IPR001715 GO:0005515
Aed2g1593 561 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 1 334 - -
Aed2g1593 561 Pfam Calponin homology (CH) domain 426 492 IPR001715 GO:0005515
Aed2g1593 561 Pfam Calponin homology (CH) domain 146 238 IPR001715 GO:0005515
Aed2g1593 561 Pfam Calponin homology (CH) domain 269 407 IPR001715 GO:0005515
Aed2g1593 561 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 331 561 - -
Aed2g1593 561 SMART ch_5 125 238 IPR001715 GO:0005515
Aed2g1593 561 SMART ch_5 425 515 IPR001715 GO:0005515
Aed2g1593 561 SMART ch_5 270 406 IPR001715 GO:0005515
Aed2g1593 561 CDD CH 124 238 IPR001715 GO:0005515
Aed2g1593 561 PANTHER FIMBRIN/PLASTIN 331 561 IPR039959 GO:0051015|GO:0051017
Aed2g1593 561 ProSiteProfiles Calponin homology (CH) domain profile. 268 408 IPR001715 GO:0005515
Aed2g1593 561 MobiDBLite consensus disorder prediction 526 561 - -
Aed2g1593 561 MobiDBLite consensus disorder prediction 529 561 - -
Aed2g1593 561 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1593 Aed-Chr2 20076871 20085041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1593 161 519 EF-hand Containing Proteins AT5G55400 41.333 5.08e-75 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1593 - K17275 gmx:100799696 637.491