Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0860 ATGAAGCTGTCCACTCAGTTTCATCAAGTTTTCAAGCTTATTGACACTAATGGGGATGGGAAGATCTCAGCCACAGAGCTCAGTGAAGTGCTCTCATGCCTTGGATCATACAACAACAAGTGCACTGCTGCCAAGGAAGCTGAAGGCATGGTGAGAGTGCTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATCATGGTTGTCATGAATGGCATAGAAGAAGAAGAAGAGAAATTTGAAAGTGGCATGGACATGGAGCATGATCATGATCATGATGATGGCTACCTCATGGATGCTTTTCTTATCTTTGACACTGACAAGAATGGTTTGATTTCAGCCAAGGAACTGCAGAGAGTTCTGATCAATCTAGGGTGTGATAATTGTAGTCTCAAAGAGTGCAAGAGCATGATCAAAGGGGTTGATAAGAATGGAGATGGGTTTGTGGATTTTGAAGAATTTAGATCCATGATGCAAAGTGGACTTGACAATTAG 501 0.4251 MKLSTQFHQVFKLIDTNGDGKISATELSEVLSCLGSYNNKCTAAKEAEGMVRVLDFNGDGFVDLDEFIMVVMNGIEEEEEKFESGMDMEHDHDHDDGYLMDAFLIFDTDKNGLISAKELQRVLINLGCDNCSLKECKSMIKGVDKNGDGFVDFEEFRSMMQSGLDN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0860 166 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Aed2g0860 166 CDD EFh 6 72 IPR002048 GO:0005509
Aed2g0860 166 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Aed2g0860 166 PANTHER CALCIUM BINDING PROTEIN 6 163 - -
Aed2g0860 166 Gene3D - 84 165 - -
Aed2g0860 166 ProSitePatterns EF-hand calcium-binding domain. 107 119 IPR018247 -
Aed2g0860 166 ProSiteProfiles EF-hand calcium-binding domain profile. 131 166 IPR002048 GO:0005509
Aed2g0860 166 Gene3D - 1 83 - -
Aed2g0860 166 Pfam EF-hand domain pair 99 161 IPR002048 GO:0005509
Aed2g0860 166 Pfam EF-hand domain pair 6 68 IPR002048 GO:0005509
Aed2g0860 166 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Aed2g0860 166 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 6 163 - -
Aed2g0860 166 ProSiteProfiles EF-hand calcium-binding domain profile. 94 129 IPR002048 GO:0005509
Aed2g0860 166 SMART efh_1 98 126 IPR002048 GO:0005509
Aed2g0860 166 SMART efh_1 6 34 IPR002048 GO:0005509
Aed2g0860 166 SMART efh_1 46 74 IPR002048 GO:0005509
Aed2g0860 166 SMART efh_1 135 163 IPR002048 GO:0005509
Aed2g0860 166 CDD EFh 98 161 IPR002048 GO:0005509
Aed2g0860 166 SUPERFAMILY EF-hand 6 162 IPR011992 -
Aed2g0860 166 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Aed2g0860 166 ProSitePatterns EF-hand calcium-binding domain. 144 156 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0860 Aed-Chr2 6582747 6583247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0860 99 165 EF-hand Containing Proteins AT1G24620 35.821 9.55e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0860 - - gmx:100799475 263.077