Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0663 ATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTGAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTATTTCTACCACAACTTCTTCTGTATCCCAATCCATCTGACCCCTTGAATGGAGAAGCTGCAGCTTTACTGATGCGTGATCGAGCCACTTATGAGCAAAGGGTTAAAGAGTTCTGTGAGAAGTATGCTAAACCTGAAGACATAGGAGCTGCCATAGAAGAGAACTCCAGTGATGAGGAAGAGCTAAGTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGATCCCTAG 555 0.4234 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRATYEQRVKEFCEKYAKPEDIGAAIEENSSDEEELSEDEYDSSDEQVAGKADP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0663 184 MobiDBLite consensus disorder prediction 156 173 - -
Aed2g0663 184 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Aed2g0663 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
Aed2g0663 184 SMART ubc_7 4 148 - -
Aed2g0663 184 CDD UBCc 7 143 IPR000608 -
Aed2g0663 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Aed2g0663 184 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Aed2g0663 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Aed2g0663 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Aed2g0663 184 MobiDBLite consensus disorder prediction 153 184 - -
Aed2g0663 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0663 Aed-Chr2 4802868 4806058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0663 3 150 Miscellaneous Gene Families AT3G17000 22.930 1.37e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0663 K10576 - gmx:548025 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0663 2 4802868 4806058 Aed2g0663 2 4802868 4806058 ECH
Aed3g0608 3 4317007 4320077 Aed2g0663 2 4802868 4806058 PCT