Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0658 ATGCTATGCAAAATCCATTTCAAAAAGCAGCTCCGTTTCTCTCTAACCCCTTATTCGTTTGTCACTCAATGCTCCCATTCATGGAGCATAATCAGAGCTTCTGTGCCACTTCCTGATGAAACACATTTCAGGGACCCTCAATCTGTTCATTTGTTTTGTGCCAATGCCCTCAAAGTTTCTGCCAAAAGGGACCTTCTTCCTGAAGGAAAACAGCTACATGCCCATTTGATCAAGTTTGGATTTTGCCATGTTCTGTCCCTGCAAAATCAGATTTTGAGTGTTTATCTTAAGTGTAAGGAAGCTGAAGATGCGGAGAAACTGTTTGAGGAATTGCCGGTGAGAAATGTCGTGTCATGGAACATTCTGATTCGCGGTATAGTTGGATGTGGCAATGCATTTGAAAATGACTCGAGACAACAACTTTGCTTTTCTTATTTTAAAAGGATGTTGTTGGAAATGGTGGTTCCGGATGGTACAAGTTTTAATGGTCTCATTGGTGTTTGTGTCAAGTTTCATGATATTGACATGGGTTTCCAGTTGCATTGTTTTGCAGTGAAACTGGGATTGGATTTGGATTGTTTTGTAGGAAGTGTTCTTGTTGATTTATATACAAAATGTGGTTTAGTTGAGAATGCAAGGAGGGTTTTTCATGTTGTTCCACGTAGGGATTTGGTCATGTGGAATGTGATGATTTCTGGCTATGCCTTGAATTGCTTACCAAAAGAGGCTTTTGGCATGTTCAACTTGATGCGATCTGATGGCACAAATGGGGATGAGTTCACTTTTAGCAGCGTTCTTAGTATATGTGATACTTTGGAATATTATGATTTTGGAAGGCAGGTTCATGGCCATATTCTGAAGCATTCGTTTGATTCAGATGTGCTTGTAGCTAGTGCATTGATCAACATGTATGCAAAAAATGAAAATATAAACGACGCATGCAGACTATTTGATAGGATGGTGATTCGAAATGTAGTGGCATGGAACACCATTATTATTGGATGTGGGAATTGTGGAGAAGGGAATGAGGTTATGAAGCTTCTCAGAGAGATGCTCTGCGAAGGGTTTTTACCTGATGAACTGACTATTTCCAGCATTATTAGTTCATGTGGCTATGCTTCTGCCATTACTGAAACAATGCAAGCTCATGCTTTTGCTGTTAAGTCATCATTTCAAGAATTTGTATCTGTTGCCAATTCCTTGATTGGCACGTACTCCAAGTGTGGTAGCATTACTAATGCATGTAAATGCTTCAGATTAACTAGAGAACCTGATCTTGTTACATGGACTTCGTTGATAAATGCATATGCATTCCATGGTCTTGCCAAAGAAGCAATTGAAGTGTTTGAGAAGATGCTATCTTGTGGAATAATACCGGATCGAATTTCCTTTCTTGGTGTTCTCTCTGCTTGTTCTCATTGTGGGCTTGTGACTAAGGGACCTCACTACTTTAACTTGATGACCAGTGTGTATAAGATTGTTCCTGATTCAGGTCACTATACCTGTCTTGTTGACCTTCTTGGAAGACATGGTCTTGTAAATGAGGCTTTCGAATTCTTGAGGTCAATGCCAATGGAAGCTGAGTCAAATACATTAGGAGCATTTATTGGATCTTGCAATCTCCATGCAAATATAGGACTGGCTAAATGGGCTGCTGAAAAGCTCTTCACCATAGAGCCAGAGAAGAATGTTAACTATGCAGTCATGTCTAACATTTATGCTTCCCATAGACATTGGTGTGATGTGGAAAGAGTTAGAAAAATGATGGGGAACAACAAGTGCGATGCAAGAGTCCCTGGTTGCAGCTGGATAGAGATTGGTAACCAAGTTCATTCATTTGTATCCAATGATAAGACACACCCTAAAGCTTTAGAAATGTATGCTACATTGAAAATGCTACTTTGGCCAATGAAGGAAAAAAATGGCATGACTGCATAG 1938 0.3978 MLCKIHFKKQLRFSLTPYSFVTQCSHSWSIIRASVPLPDETHFRDPQSVHLFCANALKVSAKRDLLPEGKQLHAHLIKFGFCHVLSLQNQILSVYLKCKEAEDAEKLFEELPVRNVVSWNILIRGIVGCGNAFENDSRQQLCFSYFKRMLLEMVVPDGTSFNGLIGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYTKCGLVENARRVFHVVPRRDLVMWNVMISGYALNCLPKEAFGMFNLMRSDGTNGDEFTFSSVLSICDTLEYYDFGRQVHGHILKHSFDSDVLVASALINMYAKNENINDACRLFDRMVIRNVVAWNTIIIGCGNCGEGNEVMKLLREMLCEGFLPDELTISSIISSCGYASAITETMQAHAFAVKSSFQEFVSVANSLIGTYSKCGSITNACKCFRLTREPDLVTWTSLINAYAFHGLAKEAIEVFEKMLSCGIIPDRISFLGVLSACSHCGLVTKGPHYFNLMTSVYKIVPDSGHYTCLVDLLGRHGLVNEAFEFLRSMPMEAESNTLGAFIGSCNLHANIGLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWCDVERVRKMMGNNKCDARVPGCSWIEIGNQVHSFVSNDKTHPKALEMYATLKMLLWPMKEKNGMTA 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0658 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Aed2g0658 645 Pfam PPR repeat 89 115 IPR002885 -
Aed2g0658 645 Pfam E motif 542 605 IPR046848 -
Aed2g0658 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Aed2g0658 645 Gene3D Tetratricopeptide repeat domain 175 273 IPR011990 GO:0005515
Aed2g0658 645 Gene3D Tetratricopeptide repeat domain 274 390 IPR011990 GO:0005515
Aed2g0658 645 Gene3D Tetratricopeptide repeat domain 40 174 IPR011990 GO:0005515
Aed2g0658 645 TIGRFAM PPR: pentatricopeptide repeat domain 298 326 IPR002885 -
Aed2g0658 645 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Aed2g0658 645 TIGRFAM PPR: pentatricopeptide repeat domain 225 255 IPR002885 -
Aed2g0658 645 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Aed2g0658 645 PANTHER OS07G0578800 PROTEIN-RELATED 33 625 IPR045215 GO:0003723|GO:0009451
Aed2g0658 645 PANTHER OS07G0259400 PROTEIN 33 625 - -
Aed2g0658 645 Gene3D Tetratricopeptide repeat domain 395 626 IPR011990 GO:0005515
Aed2g0658 645 Pfam PPR repeat family 223 267 IPR002885 -
Aed2g0658 645 Pfam PPR repeat family 424 472 IPR002885 -
Aed2g0658 645 Pfam PPR repeat family 323 370 IPR002885 -
Aed2g0658 645 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Aed2g0658 645 Pfam PPR repeat 493 523 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0658 Aed-Chr2 4764328 4766265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0658 52 639 Glycoside Hydrolase AT3G49170 32.107 8.80e-104 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0658 - - gmx:100778378 1164.06