LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g0579	ATGCCGACGGGGCTACCACCGGCGGCGAACTCCTCCGTGGCGCCGGAAGACGAGGGGTGGGTGTGGGCTCAGATCAAGGCGGAGGCGCGCCGCGATGCCGAGTCGGAGCCGGCGCTGGCGAGCTACCTCTACTCGACGATCCTCTCGCACTCGTCACTGGAGCGTTCTCTATCTTTTCACCTCGGAAACAAGCTCTGTTCCTCGACGCTTCTCTCGACGCTGCTCTATGATTTGTTTCTGAACGCGTTCTCCTCCGACCCCTCCCTCAGCTCCGCCGCCGTCGCCGACCTCCGCGCCGCCCGCGAACGCGACCCCGCCTGCGTCTCCTACTCCCACTGCCTCCTCAATTACAAAGGCTTCCTCGCTTGCCAGGCACACCGTGTGGCACACCTGTTGTGGAGGCAATCACGGAGGCCGTTGGCGTTGGCCCTGCACTCTCGGATTGCGGATGTGTTTGCAGTGGACATTCACCCGGCAGCAAGGATTGGGAAGGGGATTCTGTTTGATCATGCCACTGGGGTGGTGGTGGGGGAGACAGCTGTGATTGGGAACAATGTGTCAATCCTGCACCACGTTACGCTGGGTGGGACTGGCAAGGTTGGTGGTGACCGGCATCCTAAGATTGGGGATGGGGTGCTGATTGGTGCTGGTGCTACCATTCTGGGGAATATTAAGATTGGGGAAGGTGCAAAGGTCGGTGCCGGCTCGGTGGTTTTAATCGATGTGCCACCGCAGACAACAGCTGTGGGGAATCCGGCGAGGTTGGTTGGTGGTAAGGAGAAGCCCTCTAAGCATGAGGATGTGCCTGGGGAGTCCATGGACCATACTTCCTTTATCTCTGAGTGGTCAGATTATATCATTTGA	864	0.5926	MPTGLPPAANSSVAPEDEGWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLSSAAVADLRAARERDPACVSYSHCLLNYKGFLACQAHRVAHLLWRQSRRPLALALHSRIADVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTGKVGGDRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPQTTAVGNPARLVGGKEKPSKHEDVPGESMDHTSFISEWSDYII	287

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed2g0579	287	ProSitePatterns	Hexapeptide-repeat containing-transferases signature.	214	242	IPR018357	GO:0016740
	Aed2g0579	287	Gene3D	Hexapeptide repeat proteins	155	276	-	-
	Aed2g0579	287	Pfam	Serine acetyltransferase, N-terminal	21	125	IPR010493	GO:0005737\|GO:0006535\|GO:0009001
	Aed2g0579	287	MobiDBLite	consensus disorder prediction	258	272	-	-
	Aed2g0579	287	Gene3D	serine acetyltransferase, domain 1	1	154	IPR042122	-
	Aed2g0579	287	Pfam	Hexapeptide repeat of succinyl-transferase	172	188	IPR001451	-
	Aed2g0579	287	MobiDBLite	consensus disorder prediction	252	274	-	-
	Aed2g0579	287	Pfam	Bacterial transferase hexapeptide (six repeats)	205	238	IPR001451	-
	Aed2g0579	287	SMART	SATase_N_2_a	21	125	IPR010493	GO:0005737\|GO:0006535\|GO:0009001
	Aed2g0579	287	SUPERFAMILY	Trimeric LpxA-like enzymes	20	257	IPR011004	-
	Aed2g0579	287	CDD	LbH_SAT	152	252	IPR045304	-
	Aed2g0579	287	TIGRFAM	cysE: serine O-acetyltransferase	95	254	IPR005881	GO:0005737\|GO:0006535\|GO:0009001
	Aed2g0579	287	PANTHER	SERINE ACETYLTRANSFERASE	10	287	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g0579	Aed-Chr2	4225592	4228055	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g0579	21	275	Miscellaneous Gene Families	AT2G17640	56.863	2.31e-91	272

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g0579	K00640		-	gmx:547632	550.821