Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0561 ATGGGATCAGGAAGCAGTGTAGATGTGTACTCCAATAGCCATCAAGAGGATGCATACAAGAGCAAAGTAGAGGATGGAATGAACCAATATGGAAACTCCACTTGTTTGAAAGTTGCCAAACTCTACCATCTTGCTTTTACCAGAGCGACGCTCTTACTGTTAGGGATAACCGATGTCTCACTGGAGAACCAAATTAAGGCAGTTCATGACTCAAGACTCAAGATAGTCCCACCTTTAAGGGCACAGAAGGCCAGTGTCAGCCCATTTAATGGCCCAAAATACCATAGCTTCATGGATAACCTAGCAGCACCTTTTCATCATCTTAATCCTTCTTTTCTTCAGAACCCACAAACCCACATGCAACCCAGAAGCCATTCACCCTCTTCTGTTTCTCTTGGAATGTCAGAAACTCAACTGGTTTCTTCTCCTCAATTTTCCTCACCAAATTTTTCTCCATTCTTTCACCCTTTGGGTGGGTTAAGGACTCTGGATTCTGTGAGGAAATTGCATGCCCAGATGATCAAAATGCCAAAAAAAGGAAACTTGGTTACGATGGATGGAAGTATGATGAGAAACTACTTGGAATTTGGAGACTTTGAGTCAGCAACAAAGGTATTCTTTGTGGGTTTTGCAAGGAATTACCTTCTATGGAACTCTTTTCTTGAGGAGTTTGCAAGTTTTGGAGGTGACTCACATGAGATTCTGGAGGTCTTCAAGGAGTTGCATGATAAAGGAGTGAAATTTGACAGTAAAGCTCTCACTGTTGTTCTGAAAATTTGTTTGGCTTTAATGGAGTTGTGCCTTGGGATGGAAGTTCATGCTTGTTTGGTTAAGAGAGGCTTCCATGTTGATGTACACTTGAGTTGTGCATTGATCAATCTCTATGAGAAGTGTTTGGGAATAGATAGGGCAAATCAAGTTTTTGATGAGACTCCACTACAAGAAGATTTCTTGTGGAATACAATTGTTATGGCAAACTTGAGGAGTGAGAGGTGGGAGGATGCCTTGGAACTGTTCGGTCGAATGCAATCAGCTTCTGCCGAAGCCACTGATGGCACCATTGTCAAGCTGCTGCAAGCATGTGGAAAATTGAGAGCTCTCAATGAAGGGAAGCAAATTCATGGGTATGTTATAAGATTTGGAAAAGTGTCTAATACTTCAATTTGCAACTCTGTAGTAAGCATGTATTCTAGGAACAATAGACTTGAACAAGCTAAAGCAGCTTTTGCTTCAATTGAGGATCACAACTTGGCATCATGGAACTCAATAATTGCAAGTTATGCAGCCAATGGCAATGTGAGTGGTGCCTGGGATATCTTCCAAGAAATGGAATCTTACGGCATCAAACCAGACATTATAACTTGGAATTCTCTTATGTCTGGCCATCTTCTTCAGGGGTCATATGAAAATGTTCTCACCAATTTCCGGAGCCTGCAAAGTGACGGCTTCATGCCAGATTCATGTTCAATAACTAGTGCTCTACAAGCAGTTATTGAATTGGGTTGCTTTAATTTAGGGAAAGAAATCCATGGTTACATAATGAGAAGCTGTTGTCAAAATGAGAACTACATGGATGCCCTGCAGTTTTTCAGCCAAATGCAAGAAGAAAATGTAAAACCTAACTCAACTACCATTTGCACCCTTATTCGGGCATGTGCGGGCCCATCACTGTTAAAGAAAGGTGAAGAGATACACTGCTTCAGTATGAGGCATGGGTTTGTGGATGAAATATATATAGCCACAGCACTCATTGACATGTATAGTAAGGGAGGAAAACTAAAAGTAGCCCATGAGGTTTTCAGGAATATTAAGGAGAAAACACTACCATGTTGGAATTGCATGATGATGGGATATGCTATTTATGGCCATGGGGAAGAGGTATTTGCTCTATTCGACAGCATGCGCAAAATTGGTATCCGACCTGATGCTATAACCTTCACAGCTCTTCTATCTGGCTGCAAGAATTCAGGTTTAGTTATGGAAGGGTGGAAGTACTTTGACAGCATGAAGACAGATTACAATATTACTCCAACAATTGAGCACTACTCCTGCATGGTAGATCTTCTTGGAAAAGCTGGTTTTCTTGATGAAGCTTTGGATTTCATCCACGCCATGCCACAAAAGGCAGATGCTAGTATTTGGGGTGCAGTTCTTGCAGCCTGCAGACTTCACAAAGACATCAAGATAGCAGAGATTGCAGCAAGGAATCTTTTCAGGTTGGAACCATATAATTCTGCTAACTATGTGCTGATGATGAACATATATTCCACTTTTGACAGATGGGGGGACGCGGAGCGCCTTAGAGAGTCAATGACTGCCATGGGAGTGAAAATCTCAAATGTTTGGAGTTGGATACAAGTTAAGAAGACTATTCATGTGTTCTCCACAGAAGGGAAATCACATCCAGAAGAAGGAGAAATATATTTTGAGTTGTATCAATTAATCTCTGAGATAAAAAAGTTGGGGTATGTACCTGATAAAAGTTGTGTACATCAGAACATTGATGACAGTGAGAAGGAGAAGATTTTGCTCAGTCACACAGAGAAGTTGGCTATGGCGTATGGACTGATGAAAACTAAAGGAGGAACACCAATCAGGGTAGTGAAGAACACAAGAATTTGTCATGACTGTCACACAGCAGCAAAGTACATTTCCTTGGCTCGAAACCGCGAGATTTTCCTCAGAGATGGTAGCCGTTTTCACCATTTCATGAATGGAGAATGCTCCTGCAATGATCGTTGGTAA 2745 0.4138 MGSGSSVDVYSNSHQEDAYKSKVEDGMNQYGNSTCLKVAKLYHLAFTRATLLLLGITDVSLENQIKAVHDSRLKIVPPLRAQKASVSPFNGPKYHSFMDNLAAPFHHLNPSFLQNPQTHMQPRSHSPSSVSLGMSETQLVSSPQFSSPNFSPFFHPLGGLRTLDSVRKLHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELCLGMEVHACLVKRGFHVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELFGRMQSASAEATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGKVSNTSICNSVVSMYSRNNRLEQAKAAFASIEDHNLASWNSIIASYAANGNVSGAWDIFQEMESYGIKPDIITWNSLMSGHLLQGSYENVLTNFRSLQSDGFMPDSCSITSALQAVIELGCFNLGKEIHGYIMRSCCQNENYMDALQFFSQMQEENVKPNSTTICTLIRACAGPSLLKKGEEIHCFSMRHGFVDEIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFALFDSMRKIGIRPDAITFTALLSGCKNSGLVMEGWKYFDSMKTDYNITPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFDRWGDAERLRESMTAMGVKISNVWSWIQVKKTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVPDKSCVHQNIDDSEKEKILLSHTEKLAMAYGLMKTKGGTPIRVVKNTRICHDCHTAAKYISLARNREIFLRDGSRFHHFMNGECSCNDRW 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0561 914 TIGRFAM PPR: pentatricopeptide repeat domain 511 541 IPR002885 -
Aed2g0561 914 TIGRFAM PPR: pentatricopeptide repeat domain 644 678 IPR002885 -
Aed2g0561 914 TIGRFAM PPR: pentatricopeptide repeat domain 610 643 IPR002885 -
Aed2g0561 914 TIGRFAM PPR: pentatricopeptide repeat domain 419 452 IPR002885 -
Aed2g0561 914 Gene3D Tetratricopeptide repeat domain 661 839 IPR011990 GO:0005515
Aed2g0561 914 Gene3D Tetratricopeptide repeat domain 328 511 IPR011990 GO:0005515
Aed2g0561 914 Gene3D Tetratricopeptide repeat domain 157 266 IPR011990 GO:0005515
Aed2g0561 914 Pfam PPR repeat family 513 553 IPR002885 -
Aed2g0561 914 Pfam PPR repeat family 416 461 IPR002885 -
Aed2g0561 914 Pfam PPR repeat family 610 653 IPR002885 -
Aed2g0561 914 Pfam PPR repeat 318 344 IPR002885 -
Aed2g0561 914 Pfam PPR repeat 388 414 IPR002885 -
Aed2g0561 914 Pfam PPR repeat 681 707 IPR002885 -
Aed2g0561 914 Pfam PPR repeat 581 606 IPR002885 -
Aed2g0561 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Aed2g0561 914 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 313 516 - -
Aed2g0561 914 PANTHER OS05G0586900 PROTEIN 229 310 - -
Aed2g0561 914 PANTHER OS05G0586900 PROTEIN 517 902 - -
Aed2g0561 914 Gene3D Tetratricopeptide repeat domain 566 660 IPR011990 GO:0005515
Aed2g0561 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Aed2g0561 914 Pfam E motif 724 786 IPR046848 -
Aed2g0561 914 Pfam DYW family of nucleic acid deaminases 822 914 IPR032867 GO:0008270
Aed2g0561 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Aed2g0561 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Aed2g0561 914 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 229 310 - -
Aed2g0561 914 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 517 902 - -
Aed2g0561 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Aed2g0561 914 PANTHER OS05G0586900 PROTEIN 313 516 - -
Aed2g0561 914 Gene3D Tetratricopeptide repeat domain 512 565 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0561 Aed-Chr2 4082485 4086486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0561 147 914 Glycoside Hydrolase AT3G49170 31.744 1.75e-128 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0561 - - gmx:100801069 895.96