Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0518 ATGAGGCAAGTGAAGCAAATCCAAGGTTACACTTTAAGAAATGGCATAGACCACACCAAAATCCTCATTGAGAAGCTACTTGAAATCCCAAACCTTCACTATGCACACATGGTGTTGAACCATTCCCCAAAGCCAACTCTTTTCCTCTACAACAAGCTCATTCAAGCCTACTCCTCCTATCCCCAACACCAAGACCAATGCTTCTCCCTTTACTCCCAAATGCGCCTTCATGGCTTCCTATCAAACCAACACACTTTCAACTTCCTCTTCTCTGCATGCACTTCCCTTTCTTCCCCTTCCCTTGGCCAAATGCTCCATACCCATTTCATCAAATCAGGCTTTGAACCTGACCTCTTTGCTGCCACTGCTTTGCTTGATATGTATGCGAAGGTGGGTACATTGAAGCTGGCACGGAAACTGTTTGATGAAATTCCTGTGAGAGGGGTACCCACATGGAATGCTATGATGTCTGGGTATGCAAGATTTGGTGATATGGAGGGAGCTTTAGAATTGTTTAGGTTGATGCCTTCTAGGAATGTGGTGTCATGGACCACCATGATATCCGGTTACTCACGGAACAAACAGTATGGGGAGGCTTTGGGGTTGTTCTTGAGGATGGAGCAGGAGAAAGGCATAATGCCCAATGAAGTAACCTTGGCAAGCATTTTGCCAGCTTGTGCAAATCTTGGGGCTCTGGAGATTGGGCACAGGGTTGAAGCATATGCTAGGAAGAATGGGTTCTTTAAGAATTTATATGTAAGCAATGCTGTGTTGGAGATGTATGCAAAATGTGGCGAGATTGATGTTGCTTGGCGTGTGTTCAATGAGATTGGCAGGTTGAGAAACTTGTGCTCTTGGAATTCAATGATCATGGGTTTTGCTGGAGAAGGAACTTCACCTGGTGATGTGACATTTGTGGGGCTCCTCTTGGCATGCACTCATGGTGGCATGGTTGAAAAAGGCAAGCATATCTTCAAGTCAATGACCACAGCTTTCCACATTATTCCCAAACTAGAACACTATGGATGCATGGTTGATCTCCTAGGCCGTGCCGGGCAATTGAGAGAAGCTTATGAGGTAATACAAAGTATGGCCATGAAGCCAGACTCAGTGATATGGGGGGCTCTATTGGGAGCTTGCAGCTTCCATGGTAATGTAGAGCTGGCTGAGATTGCAACTGAGTCTCTATTCGTGCTTGAGCCTTGGAATCCGGGAAACTATGTCATTCTTTCCAACATTTATGCATCAGCTGGTCAATGGGATGGAGTTGCAAAGCTCAGGAAAGTGATGAAAGGAAGCAAAATTACAAAGTCAGCTGGACATAGCTTGATTGAAGAGGGAGGTCAACTGCATATGTTTATTGTGGAAGATAGATCACATCCTAAAAGAAACGAAATTTTTGCCTTGCTTGATGGAGTTTATGAAATGATAAAGCTTAATAGAAGTGCATTTGAATGTCAATTGGATCTTGATTTGAGCAACTAA 1485 0.4418 MRQVKQIQGYTLRNGIDHTKILIEKLLEIPNLHYAHMVLNHSPKPTLFLYNKLIQAYSSYPQHQDQCFSLYSQMRLHGFLSNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVGTLKLARKLFDEIPVRGVPTWNAMMSGYARFGDMEGALELFRLMPSRNVVSWTTMISGYSRNKQYGEALGLFLRMEQEKGIMPNEVTLASILPACANLGALEIGHRVEAYARKNGFFKNLYVSNAVLEMYAKCGEIDVAWRVFNEIGRLRNLCSWNSMIMGFAGEGTSPGDVTFVGLLLACTHGGMVEKGKHIFKSMTTAFHIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMAMKPDSVIWGALLGACSFHGNVELAEIATESLFVLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSLIEEGGQLHMFIVEDRSHPKRNEIFALLDGVYEMIKLNRSAFECQLDLDLSN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0518 494 PANTHER OS06G0125600 PROTEIN 2 445 - -
Aed2g0518 494 Pfam PPR repeat 255 277 IPR002885 -
Aed2g0518 494 Pfam PPR repeat 122 149 IPR002885 -
Aed2g0518 494 Pfam PPR repeat 340 364 IPR002885 -
Aed2g0518 494 Pfam E motif 383 445 IPR046848 -
Aed2g0518 494 TIGRFAM PPR: pentatricopeptide repeat domain 181 216 IPR002885 -
Aed2g0518 494 TIGRFAM PPR: pentatricopeptide repeat domain 151 180 IPR002885 -
Aed2g0518 494 Gene3D Tetratricopeptide repeat domain 298 465 IPR011990 GO:0005515
Aed2g0518 494 Gene3D Tetratricopeptide repeat domain 233 297 IPR011990 GO:0005515
Aed2g0518 494 Gene3D Tetratricopeptide repeat domain 119 232 IPR011990 GO:0005515
Aed2g0518 494 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 445 - -
Aed2g0518 494 Pfam PPR repeat family 178 227 IPR002885 -
Aed2g0518 494 Gene3D Tetratricopeptide repeat domain 9 109 IPR011990 GO:0005515
Aed2g0518 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0518 Aed-Chr2 3706726 3708661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0518 5 478 Glycoside Hydrolase AT3G49170 32.394 1.31e-79 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0518 - - gmx:100790321 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0518 2 3706726 3708661 Aed2g0518 2 3706726 3708661 ECH