Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0516 ATGAACCAAGAAATGAATGGGGTTGAGACTGAGAAGAAGAGACATGAGAAAGTGGATTATGATGTGCAAGAGAAAATAGACTATGTGTTTAAGGTGGTGGTGATAGGGGACTCAGCAGTTGGAAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAGTTCTGCTTTGACTCTAAGTCCACCATTGGGGTTGAATTTCAGACTAGGACTGTCACTATTAATGCCAAAGTCATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGAGCTGTAACAAGTGCATACTACAGAGGTGCATTAGGGGCAATGCTGGTATATGACATAACAAAGAGACAATCTTTTGATCATGTTGCAAGGTGGGTTGAGGAGCTGCGTGCACACGCAGATAGCTCCATTGTGATAATGTTAGTTGGGAACAAAGCTGATCTTGTGGACCAGAGAACGGTGCCAACTGAAGATGCAGTTGAGTTTGCTGAGGACCAAGGCCTCTTCTTCTCTGAGACTTCAGCTCTCAGTGGTGACAATGTGGAGAGTGCTTTTGTCAATTTGCTAGAAGAGATCAACAGGGTTGTGTCTAAGAAGACTTTGGAATGTGGTCATGGGAAGGAGAATGGTTGTGATAGCAACAACGTTGCCTCACTCAAAGGAACAAAGGTTGATGTAGTCTCGGGTCATGAGTTGGAAATTAGTGAGATGAAGAAATTGTCTTCGTGCTCTTGTTAG 732 0.4358 MNQEMNGVETEKKRHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINAKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLVGNKADLVDQRTVPTEDAVEFAEDQGLFFSETSALSGDNVESAFVNLLEEINRVVSKKTLECGHGKENGCDSNNVASLKGTKVDVVSGHELEISEMKKLSSCSC 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0516 243 PANTHER RAS-RELATED PROTEIN RABA3 1 243 - -
Aed2g0516 243 SMART ras_sub_4 27 193 - -
Aed2g0516 243 TIGRFAM small_GTP: small GTP-binding protein domain 29 184 IPR005225 GO:0005525
Aed2g0516 243 SMART rab_sub_5 30 193 - -
Aed2g0516 243 SMART ran_sub_2 35 238 - -
Aed2g0516 243 Gene3D - 22 221 IPR027417 -
Aed2g0516 243 CDD Rab11_like 27 190 - -
Aed2g0516 243 Pfam Ras family 31 191 IPR001806 GO:0003924|GO:0005525
Aed2g0516 243 ProSiteProfiles small GTPase Ras family profile. 24 226 IPR001806 GO:0003924|GO:0005525
Aed2g0516 243 ProSiteProfiles small GTPase Rab1 family profile. 25 233 - -
Aed2g0516 243 PANTHER - 1 243 - -
Aed2g0516 243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 197 IPR027417 -
Aed2g0516 243 ProSiteProfiles small GTPase Rho family profile. 23 194 - -
Aed2g0516 243 SMART rho_sub_3 32 196 IPR001806 GO:0003924|GO:0005525
Aed2g0516 243 PRINTS Transforming protein P21 ras signature 53 69 - -
Aed2g0516 243 PRINTS Transforming protein P21 ras signature 168 190 - -
Aed2g0516 243 PRINTS Transforming protein P21 ras signature 30 51 - -
Aed2g0516 243 PRINTS Transforming protein P21 ras signature 71 93 - -
Aed2g0516 243 PRINTS Transforming protein P21 ras signature 133 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0516 Aed-Chr2 3687071 3689079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0516 K07904 - gmx:100799439 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0516 2 3687071 3689079 Aed2g0516 2 3687071 3689079 ECH
Aed2g2682 2 28911046 28913021 Aed2g0516 2 3687071 3689079 PCT