Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0343 ATGGCGTCTCATTTACTCAATCACTCCTCAAAGATGAGAAATGCTTCCAAGTTGCTGCACCACGAGCGTGCTCTTCTGGTTCGTTGGTTTTCCGCCGATGCTCAATCCTCTCTCAACCGGAACCGAGATGTGTGGAAAACTCAATTCCACGAGTCTTCAACAAGAAGCAGTGCCTTTGAACCGGCCTCCAGCTTTACTAAACATTCATTTGGTACACAGAAGAGAAACATCTCCATGGCTACCATTAAAAGGGGTTCCATTATTGGGTCTGGGTTCAATGGAGAGATTTCACAAAGTTCACAGGTGCTGTCAAGGAGATGCTATGCGTCAGCCTCAGATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAGGAAGGTGATAAAATCTCTCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCCACTGTTGAAATGGAATGTATGGAGGAAGGTTATTTGGCCAAGATAGTCCGTGGGGATGGGCAGAAAGAAATTAAAGTTGGTGAGATAATCGCCATAACTGTTGAAGATGAGGGAGATATTGGGAAGTTTACAGATTACCAACCTTCAGCATCTGAACCAAGTGCACCCCCTGCCAAAGAAACATCTGCCCCACCACCGCCAAAGAAAGAAGTGGTAGAAGAGCCTGCCCGAGAACCTGAGCCAAAGGTTTCCAAACCCAGTGTGCCACCTGCATCTGGAGATCGCATATTTGCTAGTCCTCGTGCTAGAAAGTTGGCTGAAGAGAAAAATGTACCACTCTCTAGCATTAAAGGAACAGGACCTGAAGGGCTCATTGTCAAGGCTGACATTGATGATTTCTTGGCTTCTGGTGCTAAAGAAGTTTCAGCACCTTCGAAGGCCAAGGTTGCAACAGATACAGCATTGGATTATACCGACATTCCTGTCTCTCAGATACGGAAGATCACAGCTTCACGGCTATTATTATCAAAACAAACTATTCCTCATTACTACTTAACAGTAGATACATGTGTTGACAAACTCATGAGTTTGCGAACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCATATCAGTTAACGACCTTGTAATCAAGTGTAACAGTTCATGGGCAAATGATTATATTCGCCAGTTTAACAATGTGAATATTAATGTTGCTGTGCAGACTGACAACGGGCTCTTTGTTCCAGTCGTTAGGGATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTGGCAAAGAAAGCCAAAGAAAACAGTTTGAAACCCCAAGATTATGAGGGAGGTACATTTACAGTGTCTAACCTGGGAGGGCCATTTGGTGTCAAACAATTCTGTGCAATCATCAATCCTCCTCAGGCAGGCATTCTTGCCGTTGGATCTGCTGAGAGGAGGGTTGTTCCGGGTTTGGGTGCTGAAGAATTCAAGTTTGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTTATAGATGGTGCTATTGGTGCCGAATGGTTAAAAGCATTCAAGGGCTATATTGAAAATCCAGAGTCCATGTTGTTATAA 1608 0.4484 MASHLLNHSSKMRNASKLLHHERALLVRWFSADAQSSLNRNRDVWKTQFHESSTRSSAFEPASSFTKHSFGTQKRNISMATIKRGSIIGSGFNGEISQSSQVLSRRCYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKISPGEVLCEVETDKATVEMECMEEGYLAKIVRGDGQKEIKVGEIIAITVEDEGDIGKFTDYQPSASEPSAPPAKETSAPPPPKKEVVEEPAREPEPKVSKPSVPPASGDRIFASPRARKLAEEKNVPLSSIKGTGPEGLIVKADIDDFLASGAKEVSAPSKAKVATDTALDYTDIPVSQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTQLNSLQEASGGSRISVNDLVIKCNSSWANDYIRQFNNVNINVAVQTDNGLFVPVVRDADKKGLSTIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQAGILAVGSAERRVVPGLGAEEFKFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0343 535 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 315 535 IPR001078 GO:0016746
Aed2g0343 535 Gene3D - 112 218 - -
Aed2g0343 535 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 142 171 IPR003016 -
Aed2g0343 535 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL 48 535 - -
Aed2g0343 535 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 119 535 IPR006257 GO:0004742|GO:0006090|GO:0045254
Aed2g0343 535 PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 48 535 - -
Aed2g0343 535 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 250 294 IPR036625 GO:0016746
Aed2g0343 535 MobiDBLite consensus disorder prediction 200 254 - -
Aed2g0343 535 MobiDBLite consensus disorder prediction 225 240 - -
Aed2g0343 535 Pfam e3 binding domain 255 289 IPR004167 GO:0016746
Aed2g0343 535 Gene3D - 246 297 IPR036625 GO:0016746
Aed2g0343 535 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 256 293 IPR004167 GO:0016746
Aed2g0343 535 ProSiteProfiles Biotinyl/lipoyl domain profile. 117 193 IPR000089 -
Aed2g0343 535 Pfam Biotin-requiring enzyme 119 191 IPR000089 -
Aed2g0343 535 Gene3D - 299 533 IPR023213 -
Aed2g0343 535 SUPERFAMILY Single hybrid motif 116 211 IPR011053 -
Aed2g0343 535 CDD lipoyl_domain 118 191 - -
Aed2g0343 535 SUPERFAMILY CoA-dependent acyltransferases 315 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0343 Aed-Chr2 2288219 2293719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0343 2 535 Acyl Lipid Metabolism Gene Families AT1G54220 66.545 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0343 K00627 - gmx:100804938 926.391