Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0307 ATGTATCGATTAGCTCGTAGAGTAGCTTCCTCCATTGCTAAGAACCCCGTAACCGTATACGGTGGAGTATTGACAAGCAGAAATTATGTGAGCAAAGACATAAACTTTGGGGTTCGGGCTCGTGCCTCAATCCTTCAGGGGGTAACTGAAGTTGCTGATGCAGTCAAAGTTACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAGAAGTCGTGGGAATCCGAGGATCACCAAGGATGGTGTGACTGTGGCCAAAAGTATCAAATTTAAAGACAAATCCAAAAATGTTGGTGCGGAGCTTGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGACGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCCATTGCCGCCGGTGTAAATGTTATGGATTTACGTAATGGAATAAATAAGGCAGTTGATGCTGTAATTACTGACTTGAAGACCAGAGCATTGATGATAAGTACTCCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAATGGGGAGCGTGACATTGGGGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACTGTTGCTGATGGGAATACTTTGGATAATGAGTTGGAAGTGGAATTGGAGAACCCCTTTATTCTCATCCATGACAAGAAAATTTCAGACATGAATTCACTACTGAAAATACTGGAGCTGGCAGTAACGAAAAAAAGACCACTCCTAGTTGTTGCTGAAGATGTTGAGAGTGATGCATTGGCTATGCTCATACTCAACAAGCATCACGCAGGGCTTAAGGTTTGTGCAGTAAAAGCTCCTGGTTTTGGGGATAATAGAAGAGGAAATCTAGATGATCTTGCAATTCTTACCGGAGGAGAGGTCATCACAGAAGAGCGCGGTTTGTCTCTTGATAAAATCCAACCAGAAATGATTGGCACTGCAAAAAAGGCATGTGGCTTGAACCTAGTTACTATCACCATCGATGACACTATTATTCTACATGGTGGTGGGGATAAGAAGGCCATTGAAGAGAGATGTGAACAGCTGAGAACAGCAATGGATAAGAGTTCTGCCACGTTTGATAAAGAAAAAGCACAGGAACGCCTATCAAAACTATCGGGTGGTGTAGCTGTTTTCAAAGTTGGGGGGGCTAGTGAAGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTGTTGCAGGTGGTGGAGTTGCTCTCCTATATGCTACCAAAGTCTTGGATAACCTTCAAACCCAAAATGAAGATGAGAAAAGAGGAGTACAAATTATTCAGAATGCACTCAAGGCACCTACGTTTACAATAGCTTCAAATGCCGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATCATAATTTTGGTTTTGATGCTGCTAAGGGTATCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATCCACATGACAAAAATAAACCTCCCAGTCGGGTGCCAGATATGGATGATTTGGACCTCTAA 1665 0.4336 MYRLARRVASSIAKNPVTVYGGVLTSRNYVSKDINFGVRARASILQGVTEVADAVKVTMGPKGRNVIIERSRGNPRITKDGVTVAKSIKFKDKSKNVGAELVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRNGINKAVDAVITDLKTRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTLDNELEVELENPFILIHDKKISDMNSLLKILELAVTKKRPLLVVAEDVESDALAMLILNKHHAGLKVCAVKAPGFGDNRRGNLDDLAILTGGEVITEERGLSLDKIQPEMIGTAKKACGLNLVTITIDDTIILHGGGDKKAIEERCEQLRTAMDKSSATFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVAGGGVALLYATKVLDNLQTQNEDEKRGVQIIQNALKAPTFTIASNAGFDGALVHSKLLEQDDHNFGFDAAKGIYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDNPHDKNKPPSRVPDMDDLDL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0307 554 CDD GroEL 32 534 IPR001844 GO:0042026|GO:0140662
Aed2g0307 554 SUPERFAMILY GroEL apical domain-like 213 386 IPR027409 -
Aed2g0307 554 SUPERFAMILY GroEL-intermediate domain like 166 223 IPR027410 -
Aed2g0307 554 ProSitePatterns Chaperonins cpn60 signature. 415 426 IPR018370 GO:0005524|GO:0006457
Aed2g0307 554 Pfam TCP-1/cpn60 chaperonin family 51 534 IPR002423 GO:0005524
Aed2g0307 554 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 217 546 - -
Aed2g0307 554 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 22 217 - -
Aed2g0307 554 Gene3D - 34 533 IPR027413 -
Aed2g0307 554 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 217 546 - -
Aed2g0307 554 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 22 217 - -
Aed2g0307 554 Gene3D - 165 420 IPR027410 -
Aed2g0307 554 Gene3D GroEL 217 383 IPR027409 -
Aed2g0307 554 Coils Coil 349 369 - -
Aed2g0307 554 Coils Coil 436 456 - -
Aed2g0307 554 MobiDBLite consensus disorder prediction 534 554 - -
Aed2g0307 554 SUPERFAMILY GroEL equatorial domain-like 31 535 IPR027413 -
Aed2g0307 554 PRINTS 60kDa chaperonin signature 111 138 IPR001844 GO:0042026|GO:0140662
Aed2g0307 554 PRINTS 60kDa chaperonin signature 408 429 IPR001844 GO:0042026|GO:0140662
Aed2g0307 554 PRINTS 60kDa chaperonin signature 55 81 IPR001844 GO:0042026|GO:0140662
Aed2g0307 554 PRINTS 60kDa chaperonin signature 360 385 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0307 Aed-Chr2 2016179 2021739 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0307 K04077 - gmx:100778935 941.028