Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0288 ATGGCTTATTTTGGGAGTATAACAGATGATTCCTCATGGATTTGTCTGAAGGATTTTGATTTCACTTCTTTCTGTTCTCAAAGGACCACAATATATGTTATAAATCAACTTTTTGTCTGTGTCTTCTACTTGTCTATCATTATCAGTTCATTCAGAAGAAATTCTCAGTGTGGTAGTTCTAGCAAAAGCAGGTTTTTCATTCTTGTGTCTATCTTCTGTGCTATTATTAGCATTGTGTTTTACAGTATTGGCTTGTGGAATCTCATAGTCAATAACTCTAAGCAGCTGAGCTGGTTAGCTTGCATTGTCAGAGGATTCGTTTGGACTTCTTTGGCAGTTTCTCTGCTTGTTCAGAGACACAACTGGATCAAAATCCTTAACTCTGTCTGGTGGGCATGTTCCTGTGCACTGGTTTCAGCTCTCAACATTGAAATTCTGTTTCGAAAGCACGAAATAGAAATTTTCGATGTCCTACAATGGCTCTTGCACTTCCTTCTTCTCTTCTGTGCCCTCCAAAATCTTGGTTACTTTGTCACTCAAAGTATGCCAGAAAGTTTATCTGAGCCACTGTTAGATCAAGAATTTGACACTAAACAAACAGAACTAGGCCGTGCTAGCTTTCTAAGCAAATTGACTTTCTCTTGGGTTAACTCTTTACTCAGTTTGGGTTACTCAAAGCCACTTTCTCTTGAAGACATCCCTTCCCTTCTTTCTGAAGATAAAGCAGACTTGGCCTACCAAAACTTTAAGCATGCATGGGAATTCCTTGTAAGTGAGAGGAGCAAGGACAATACCAAAAACTTGGTTTATTGGTCTATTGTCAGAACTCACTTAAAAGAGAACATATTAGTAGCATTCTACGCACTACTCAGAACCATTGCTGTTTCTGTTTCTCCTTTAATACTCTATGCTTTTGTCAACTACTCAAATAGCAGGGATGCCACAAATACAGATATCAAAGAAGGTCTTTCCATAGTTGGTTTTCTTATTCTGGCAAAAGTAGTTGATTCTTTGTCCCAGAGACATTGGTTTTTTTATTCAAGGAAGTCAGGATTGAAGATGAGATCAGCTCTGATGGTGGCAGTGTATAAAAAACAGCTAAAGCTTTCTAGCTCAGCAAGGAGAAGGCACTCAACTGGTGAAATTGTGAACTACATTGCGGTTGATGCGTATCGTATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACATCTACATTGCAGCTTGTTCTATCTATTGGAGTTCTTTTCGGAGTTGTGGGTGTTGGTGTTCTTCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTATCAATGTCCCATTTGCCAAAATCCTACAAAATTGTATGGCACAGTTCATGATTTCACAGGATGAGCGTCTTAGATCAACTTCAGAAATTCTAAATAGCATGAAAATCATTAAGTTACAGTCCTGGGAGGACAAATTCAAGAATTTGGTTGAGAACCTACGTGCTAAAGAGTTCATTTGGCTGTCTAAAGCGCAGATTATGAAAGCTTATGGCTCATTTCTCTATTGGATGTCTCCTACAATAGTTTCAGCAGTTGTTTTCCTCGGTTGTGCTCTTTTCAATAGTGCCCCATTGAATGCTGGGACCATTTTCACAGTTCTTGCAATGTTGAGGAACTTGGGAGAACCTGTTCGAATGATCCCAGAGGCTCTCTCTATAATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAATACCATTTTGCTTGATGAAGAGCTAGACAGTACCAATGGTAACAGAAGAAATATAAACCCAAGTTCAATAAATGCGGTGGAAATTCAAGCTGGGAACTTTATTTGGGATCATGAATCAGTGTTCCCAACTTTAAGAGATGTGAATTTAGAAATTAAATGGGGACAGAAAGTTGCAGTTTGTGGGCCAGTTGGAGCTGGAAAATCATCTATTTTGCATGCAGTACTTGGAGAGATTCCCAAGATCTCAGGAACTGTTAATGTGTCTGGCACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGTGATAATATACTCTTTGGCAAGCCAATGGATAAAACAAAATATGAGAATGCCATTAAAGTTTGTGCATTAGATAAGGATATTAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGTGCAGTCTACAATGATGCTGACATCTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCTCACACTGCTGCTATTCTGTTCAATGACTGTGTAATGAGGGCTCTAAGAGAGAAGACAGTCATACTAGTGACTCACCAAGTGGAGTTTCTCTCAGAAGTTGATACAATCCTGAATCTCTTGACAGCTGGGACAGCCTTTGAACAACTTGTGAGTGCTCATAAGGAAGCAATCACAGAGTTGGATCAAAATAATGAAAACAAAACTCATACTGAAGAGTCTCAAGGTTTTGGTCTCACTAAAAACCAGAGTGAGGGAGAGATTTCTACTGAGGGTCAGCATGGGGTACAGCTTACCGAAGAAGAAGAAAAACAGATTGGTGATGTTGGCTGGAAGACATTCTGGGATTATATTTCATTTTCCAAAGGTTCATTGATGCTGTGCTGGATGATGTTGGCTCAATCTGTTTTTATTGCTTTGCAGACTGCATCAATGTTTTGGCTTGCTGTAGCCGTTGAAGTTCCAAAATTAACTAGTGCCACCTTGATTGGAGTTTACTCATTAATTTCATTTTTGGGTGCTGCCTCTGTATACATAAGGTCTATCTTAGCCGCTCACCTTGGATTAAAAGCTTCTACAGCCTTCTTCACAAATTTCACAACTGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCTGTGGGAAGGATTTTAACCCGAGCTTCATCAGATTTAAGTATTCTGGACTTTGATATACCTTATTCCATCACCTTTGTAGCATCTGTAGCAATTGAAATTGTGGTGACGATTTGTATAATAGTTTTAGTAACATGGCCAGTTCTCATTGTTGCTGTTCCAGCAATGGTTGCATCAAAATATGTTCAGGGATATTATCAAGCCTCAGCAAGGGAATTAATGAGGATCAATGGAACCACAAAAGCTCCTGTCATGAACTTTGCATCTGAGACATCACTTGGTGTAGTTACTGTAAGAGCATTTAACATGGTTGACAGATTTTTTAACAATTACTTAAAGCTTGTGGACACAGATGCAACACTGTTCTTTCATTCTAATGTAGCCATGGAATGGCTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACAGTCATAACTGCAGCTTTGTTGCTTATTCTAGTTCCTCAGGGATATGTGACCCCAGGCCTTGTGGGACTGTCTCTCTCTTATGCTTTCTCCCTAACAGGATCCCAAATATTTTGGACTCGATGGTATTGCAACTTATTAAACTATATTATCTCTGTTGAAAGAATCAAGCAATTCATTAACCTTCCAGAAGAACCTCCTGCCATTGTTGAGGACAAACGACCTCCATCTTCATGGCCTTCCAAAGGCAGGATTGACCTTCAAGCCTTGGAGATAAGATATCGTCCTAATGCTCCATTAGTGCTAAAGGGTATCACTTGTACCTTTAAGGAAGGGAGTAGAGTGGGAGTTGTAGGAAGAACTGGAAGTGGAAAAAGTACACTGATAAGTGCTTTGTTTCGTTTGGTTGAGCCAGCTAGAGGTGATATTCTTATAGATGGGATTAATATATGCTCAATGGGGTTGAAGGATTTGAGAATGAAACTAAGCATCATCCCTCAAGAACCAACACTTTTCAAGGGAAGCATTAGAACCAACTTGGACCCTCTAGGCTTGTACTCAGATGATGATATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGAAACTATCAGCCATCTACCAAATCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAGAGGCAACTGTTTTGTCTTGGAAGAGTACTTCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACAGCCTCCATTGACTCTGCCACAGATGCCATTCTACAACAAATAATTAGAGAAGAATTTGTAGAGTGCACAGTTATAACAGTGGCTCACAGGGTTCCAACAGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGGGAAAATGGTGGAATATGAAGAGCCTTCAAGACTAATGGACACTAACTCTTCATTCTCCAAGTTGGTAGCTGAATATTGGTCCAGCTGCAGGAGGAATTCCTCCCCAAATCTTAGCAGGAATAATAACATCATAGAAATGGGAGAACACACAAATCGAAAGAAAATTGAATAA 4395 0.3975 MAYFGSITDDSSWICLKDFDFTSFCSQRTTIYVINQLFVCVFYLSIIISSFRRNSQCGSSSKSRFFILVSIFCAIISIVFYSIGLWNLIVNNSKQLSWLACIVRGFVWTSLAVSLLVQRHNWIKILNSVWWACSCALVSALNIEILFRKHEIEIFDVLQWLLHFLLLFCALQNLGYFVTQSMPESLSEPLLDQEFDTKQTELGRASFLSKLTFSWVNSLLSLGYSKPLSLEDIPSLLSEDKADLAYQNFKHAWEFLVSERSKDNTKNLVYWSIVRTHLKENILVAFYALLRTIAVSVSPLILYAFVNYSNSRDATNTDIKEGLSIVGFLILAKVVDSLSQRHWFFYSRKSGLKMRSALMVAVYKKQLKLSSSARRRHSTGEIVNYIAVDAYRMGEFPWWFHITWTSTLQLVLSIGVLFGVVGVGVLPGLVPLLICGLINVPFAKILQNCMAQFMISQDERLRSTSEILNSMKIIKLQSWEDKFKNLVENLRAKEFIWLSKAQIMKAYGSFLYWMSPTIVSAVVFLGCALFNSAPLNAGTIFTVLAMLRNLGEPVRMIPEALSIMIQVKVSFDRLNTILLDEELDSTNGNRRNINPSSINAVEIQAGNFIWDHESVFPTLRDVNLEIKWGQKVAVCGPVGAGKSSILHAVLGEIPKISGTVNVSGTIAYVSQTSWIQSGTVRDNILFGKPMDKTKYENAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMRALREKTVILVTHQVEFLSEVDTILNLLTAGTAFEQLVSAHKEAITELDQNNENKTHTEESQGFGLTKNQSEGEISTEGQHGVQLTEEEEKQIGDVGWKTFWDYISFSKGSLMLCWMMLAQSVFIALQTASMFWLAVAVEVPKLTSATLIGVYSLISFLGAASVYIRSILAAHLGLKASTAFFTNFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVASVAIEIVVTICIIVLVTWPVLIVAVPAMVASKYVQGYYQASARELMRINGTTKAPVMNFASETSLGVVTVRAFNMVDRFFNNYLKLVDTDATLFFHSNVAMEWLVLRIEALQNLTVITAALLLILVPQGYVTPGLVGLSLSYAFSLTGSQIFWTRWYCNLLNYIISVERIKQFINLPEEPPAIVEDKRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPARGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKALEKCQLKETISHLPNLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQIIREEFVECTVITVAHRVPTVIDSDMVMVLSYGKMVEYEEPSRLMDTNSSFSKLVAEYWSSCRRNSSPNLSRNNNIIEMGEHTNRKKIE 1464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0288 1464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 797 IPR027417 -
Aed2g0288 1464 Pfam ABC transporter transmembrane region 283 546 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g0288 1464 Pfam ABC transporter transmembrane region 885 1147 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g0288 1464 Pfam ABC transporter 619 753 IPR003439 GO:0005524
Aed2g0288 1464 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g0288 1464 Gene3D - 1181 1432 IPR027417 -
Aed2g0288 1464 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 56 1443 - -
Aed2g0288 1464 MobiDBLite consensus disorder prediction 821 840 - -
Aed2g0288 1464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1188 1431 IPR027417 -
Aed2g0288 1464 SMART AAA_5 1224 1415 IPR003593 -
Aed2g0288 1464 SMART AAA_5 628 801 IPR003593 -
Aed2g0288 1464 CDD ABCC_MRP_domain1 601 795 - -
Aed2g0288 1464 CDD ABC_6TM_ABCC_D1 283 574 IPR044746 GO:0140359
Aed2g0288 1464 CDD ABC_6TM_ABCC_D2 880 1173 IPR044726 GO:0140359
Aed2g0288 1464 ProSitePatterns ABC transporters family signature. 726 740 IPR017871 GO:0005524
Aed2g0288 1464 Pfam ABC transporter 1215 1363 IPR003439 GO:0005524
Aed2g0288 1464 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1200 1432 IPR003439 GO:0005524
Aed2g0288 1464 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 603 824 IPR003439 GO:0005524
Aed2g0288 1464 SUPERFAMILY ABC transporter transmembrane region 270 580 IPR036640 GO:0005524|GO:0016021
Aed2g0288 1464 Gene3D ABC transporter type 1, transmembrane domain 849 1179 IPR036640 GO:0005524|GO:0016021
Aed2g0288 1464 Gene3D ABC transporter type 1, transmembrane domain 258 582 IPR036640 GO:0005524|GO:0016021
Aed2g0288 1464 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 56 1443 - -
Aed2g0288 1464 CDD ABCC_MRP_domain2 1196 1416 - -
Aed2g0288 1464 Gene3D - 608 848 IPR027417 -
Aed2g0288 1464 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 886 1148 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed2g0288 1464 SUPERFAMILY ABC transporter transmembrane region 871 1180 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0288 Aed-Chr2 1871331 1877692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0288 601 841 Calmodulin-binding Proteins AT2G36910 28.736 1.31e-18 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0288 - - gmx:100784827 2488.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0288 2 1871331 1877692 Aed2g0288 2 1871331 1877692 ECH