LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed2g0251	ATGCGAAACATTCAGGCTCGTCGATTTTCCACTCTGATCGAAGCACCCACGACGAGGGCACCATTCGTTATTCCCATCCCTCACCGAACCATTCCCGAACCTCGAGGACAGGATCTGGACTTCATCACCGTCGCTCACAGCCACGTCATCAACTCCCACTGGGAAAGGCTCCACCCTTTATCCACCTCTCTCACACCCTTCCGTCTCAAACGCCTCCTCCTCGCCCTCCAAAACGACCACGTTTCCTCCCTCAAACTCTCCAATTGGGTCATCAAAGACAACCCTTCCTCCCACACCATCGACACCCACTCCATCCTCCTCCACACCCTCGCCAAACACCGCCAATTCAAAACCACCCAACAAATCCTCACACAAACCCTCTCTTCGCACTCTCCTCACACTCTCTTCCAAGCATTGTTGCTCTCCTACCGTCTCTGCAATTCTTCCCCTCTCGTCTTCGACGCTCTCTTCAAAACCCTCGCCCACACCAACAAGTTCCGCCACGCCACCCACGTTTATACCCTCATGAAAGAACACGGCTTTTCCCCCACCGTCGAATCCTGCAACGCTTTTCTAAGTTCTCTGCTTCGCCTGAGCAGAGCTGACATTGCCCTGTCGTTTTACCGCGAATTGCGTCGTTCATGCGTTTCGCCTAATGTCTACACCCTCAACATGGTTATTCGTGCTTATTGCATGTTAGGGGAAGTTCAGAAGGGCTTTGAAATGTTAGAGAAAATGATGAACATGGGTTTGAGTCCTAATGTTGGGGACAGTGAAATGGGTGGGAGGGTTTATGAGGAGATGGTGAGGAATGGGGTTAAGGCTGATATATTGACTTTTAATGCATTGATTTTGGGGCTGTGTAAGGATGGGAAGACAAAGAAGGCTGCAGGGTTTGTTAGGGAGCTTGATAAGGAGAACTTGGTCCCCAATGCGAGTACCTTTTCTGCTCTTATTACTGGGCAGTGTGTGAGGAACAACTCGGAGCGAGCCTTTCTTATTTATAGGAGCATGGTTAGGAGTGGTTGTAGTCCAAATGAGCACACTTTCCAGATGTTGATATCAGCTTTTTGCAAGAATGAGGACTTTGATGGGGCTGTGCAGGAGTGGGAAAAATCAGTTGGCATTGGCGCTGTGTAG	1140	0.5	MRNIQARRFSTLIEAPTTRAPFVIPIPHRTIPEPRGQDLDFITVAHSHVINSHWERLHPLSTSLTPFRLKRLLLALQNDHVSSLKLSNWVIKDNPSSHTIDTHSILLHTLAKHRQFKTTQQILTQTLSSHSPHTLFQALLLSYRLCNSSPLVFDALFKTLAHTNKFRHATHVYTLMKEHGFSPTVESCNAFLSSLLRLSRADIALSFYRELRRSCVSPNVYTLNMVIRAYCMLGEVQKGFEMLEKMMNMGLSPNVGDSEMGGRVYEEMVRNGVKADILTFNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCSPNEHTFQMLISAFCKNEDFDGAVQEWEKSVGIGAV	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed2g0251	379	Pfam	PPR repeat family	183	231	IPR002885	-
	Aed2g0251	379	Pfam	PPR repeat family	316	359	IPR002885	-
	Aed2g0251	379	PANTHER	PPR CONTAINING PLANT-LIKE PROTEIN	255	368	-	-
	Aed2g0251	379	PANTHER	ATPASE EXPRESSION PROTEIN 3	255	368	-	-
	Aed2g0251	379	PANTHER	ATPASE EXPRESSION PROTEIN 3	1	255	-	-
	Aed2g0251	379	TIGRFAM	PPR: pentatricopeptide repeat domain	187	220	IPR002885	-
	Aed2g0251	379	TIGRFAM	PPR: pentatricopeptide repeat domain	153	185	IPR002885	-
	Aed2g0251	379	TIGRFAM	PPR: pentatricopeptide repeat domain	314	347	IPR002885	-
	Aed2g0251	379	TIGRFAM	PPR: pentatricopeptide repeat domain	279	312	IPR002885	-
	Aed2g0251	379	TIGRFAM	PPR: pentatricopeptide repeat domain	221	255	IPR002885	-
	Aed2g0251	379	Pfam	PPR repeat	271	302	IPR002885	-
	Aed2g0251	379	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	184	218	IPR002885	-
	Aed2g0251	379	PANTHER	PPR CONTAINING PLANT-LIKE PROTEIN	1	255	-	-
	Aed2g0251	379	Gene3D	Tetratricopeptide repeat domain	74	257	IPR011990	GO:0005515
	Aed2g0251	379	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	311	345	IPR002885	-
	Aed2g0251	379	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	276	310	IPR002885	-
	Aed2g0251	379	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	219	253	IPR002885	-
	Aed2g0251	379	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	149	183	IPR002885	-
	Aed2g0251	379	Gene3D	Tetratricopeptide repeat domain	258	375	IPR011990	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed2g0251	Aed-Chr2	1652719	1654184	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed2g0251	151	377	Glycosyltransferase	AT1G05670	23.333	1.09e-22	98.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed2g0251	-		-	gmx:100792776	486.108