Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0114 ATGGTGCTCGCGGAGTTAGGAGGGAGCATTTCGCGTGCTCTTCAGCAGATGAGCAATGCAACGATCATCGACGAGAAAGTCCTCAACGATTGCCTCAACGACATCACGCGCGCGCTTCTCCAATCCGATGTTCAATTCAAGCTCGTCCGCGAAATGCAGACCAACATCAAGAACATCGTCAACCTCGACGACCTCGCCGCAGGTCACAACAAGCGCAGGATCATCCAGCAGGCCGTCTTCAACGAACTCTGCAAGATTCTCGATCCCGGAAAACCTTCTTTTACCCCCAAAAAGGGAAAACCCAGCGTCGTCATGTTCGTTGGCTTGCAAGGATCTGGTAAAACGACGACGTGCACGAAATACGCGTTTTATCATCAGAAGAAAGGGTGGAAGCCTGCTCTGGTGTGTGCGGATACGTTCAGAGCTGGTGCTTTTGATCAGTTGAAGCAAAACGCCACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCCGTGGAAGGGGTTGAACGATTCAAGAAAGAAAACTGTGATCTTATAATTGTCGACACTAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATATTCGTTATGGATAGCAGTATCGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTTATTATCACTAAAATGGATGGCCACGCAAAGGGTGGTGGTGCTCTTAGTGCTGTAGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACCGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTCAGTCGTCTATTAGGCATGGGAGACTGGTCTGGGTTCATGGATAAAATTCATGAAGTTGTTCCTATGGATCAACAGCCTGAACTTCTTCAAAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCCATCAGCCAGGTCTTTTCTATGCTACCAGGATTTAGTGCTGAATTAATGCCAAAAGGCCGTGAGAAGGAAAGCCAGGCAAAAATTAAACGTTACATGACAATGATGGATTCAATGACAAACGAAGGCAAGCATTGGATTTTGGATAGTTCAAACCCAAAGCTCATGAATGACTCCCGTGTGATGCGAATAGCTCGAGGTTCTGGTCGTCCAGTTAGGGAAGTAATGGAAATGTTAGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCCAAGAAGGGTGAAATGAGCGCCTTATCCCGAAATATGAATGCTCAGCACATGAGCAAAGTCCTCCCTCCACAGATGCTAAAGCAAATCGGAGGCATGGGTGGGTTACAAAGCTTGATGAAGCAGATGGGATCTGCTAAAGATATGATGGGAATGTTTGGTGGTGGTGAAAAGTAG 1500 0.452 MVLAELGGSISRALQQMSNATIIDEKVLNDCLNDITRALLQSDVQFKLVREMQTNIKNIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEGKHWILDSSNPKLMNDSRVMRIARGSGRPVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSAKDMMGMFGGGEK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0114 499 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Aed2g0114 499 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 497 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Aed2g0114 499 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 481 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Aed2g0114 499 Pfam SRP54-type protein, GTPase domain 101 296 IPR000897 GO:0005525|GO:0006614
Aed2g0114 499 CDD SRP54_G 102 294 - -
Aed2g0114 499 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Aed2g0114 499 Gene3D - 91 285 IPR027417 -
Aed2g0114 499 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Aed2g0114 499 SUPERFAMILY Signal peptide-binding domain 298 437 IPR036891 GO:0006614|GO:0008312|GO:0048500
Aed2g0114 499 Pfam Signal peptide binding domain 327 431 IPR004125 GO:0006614|GO:0008312|GO:0048500
Aed2g0114 499 Gene3D - 5 306 IPR042101 -
Aed2g0114 499 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Aed2g0114 499 Gene3D - 312 440 IPR036891 GO:0006614|GO:0008312|GO:0048500
Aed2g0114 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Aed2g0114 499 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Aed2g0114 499 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 497 - -
Aed2g0114 499 SMART AAA_5 100 277 IPR003593 -
Aed2g0114 499 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 431 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0114 Aed-Chr2 836538 839581 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0114 K03106 - gmx:100811698 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0114 2 836538 839581 Aed2g0114 2 836538 839581 ECH