Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2332 ATGGCGGGTTTTGGGAGCATGTTCTGTGGGGAATCTGGTTTTTGCAGTGATTTTAGGCTTCTCATTGATCCTTCCACTTGTGTGAACCATTTGTTGATCTCTTGCTTTGATGTGTTGCTGCTTATCATGCTTGTATTCATTATGATCCAGAAGTCAACATTAAAACCATCTCGGGGTCTGATACAGGTGCAAAGATATTCATATTTTCAGCTAGTTTCAGCCATAGCCAATGGTGTTCTTGGGTTGGCAATTTTGTGCTTTGGCATTTGGGTTTTAGAGGAAAGGTTGAGGAAATCCCAAACTTCGTTGCCTCTTAATTGGTGGTTGCTAGAAATCTTTCATGGACTAACATGGTTGTTAGTGACTTTAACAATAAGTCTTAAGTTGAAAAAGCTTCCAAGAGCATGGACAAGGCTTTTTTCTGTTCTAATCTTCTTGGTTTCTGGTATTTTCTTCGCCTCATCCTTGTTTTATGCAATTAGTAGCAGAGAACTATCCCTTAAGATAGCTTCAGATATTTTATCTTTTCTGGGGGCAATATTGTTGTTATTATGCACGTATAAGGAATCCAAGCATAGGGACACTGACAGTGAAGTTGATGAAAGTCTTTATGCCCCCTTAAACGGCGAGTCCAACAAAAATGATTCTATTAGTTATGTAACCCCATTTGCCAAAACTGGATTCTTTGGCAAAATGTCATTTTGGTGGATGAATCCATTGATGAAAATTGGCAAAGAGAAAACGCTTCAGGATGAAGACATTCCAAGGTTACGGGAGGAGGATCGAGCAGAAAGTTGTTATCTTTTGTTTCTGGATCAGTTGAACAGACGAAAACACAAGGATCAATCCTCGCAGCCATCAGTTTTGAGGACAATAATTTTATGCCATTGGAAAGAAATTTTAATATCAGGATTCTTTGCAATGCTTAAGGTACTTGCTCTGTCTTCAGGACCTCTTCTTTTGAATTCTTTTATATTGGTTGCTGAGGGTAACGAGAGTTTCAAATATGAAGGTTTTGTGTTGGCCATATCACTTTTCTTTATAAAAAACATAGAATCCTTATCGCAGAGGCAATGGTACTTCCGCTGCAGACTTATTGGTCTGAAAGTTAGGTCGTTGCTAACTGCAGCCATCTATAAAAAACAATTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGGTAGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGTGAATTTCCCTATTGGTTTCACCAGACTTGGACAACAAGCTTTCAGCTATGTATCTCGTTAGTTATACTTTTCCGTGCTGTTGGATGGGCAACAATTGCCTCCTTGGTGGTGATAGTAATCACTGTTCTTTGCAATACTCCACTTGCGAAGTTACAGCACAAGTTTCAAAGCAAACTTATGGTGACACAAGATGAGAGATTGAAGGCTTGTTCTGAGGCTCTGGTGAATATGAAGGTGTTGAAGTTGTATGCATGGGAAGCCAATTTTAGAAGTGCTATAGAGAGATTAAGAAATGAGGAGCTCAAATGGTTGTCTGCAGTGCAATTAAGAAAGGCGCACAACACCTTTCTCTTTTGGTCCTCCCCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTAACGTTCCTTTACATGCAAATAATGTTTTCACTTTTGTGGCAACTTTGCGCCTTGTTCAAGATCCAATTAGAACCATCCCTGATGTTATCGGGGTGATCATTCAGGCAAAAGTTGCGTTTACTCGGATTCTAAAATTCCTGGAGGCACCTGAACTGCAGAGTGCAAATACCACACAAAGGTGTCTCAATGAGAACAAGAGGGGTTCAATTTTAATCAAGTCTGCTGACTTTTCATGGGAAGATAATCTATCAAAGCCAACACTGAGAAACATAAATTTGGAGGTTAGACCAGGGCAAAAGGTGGCTATCTGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAATTCCTAATACTGAGGGGACAATTGAAGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGTCAGGTACAATAAGGGAGAATATATTGTTTGGAGCAGCTATGGATGCTGAAAAATATCAAGTAACACTTCATAGGTCTTCACTATTGAAGGACCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGGGAGAGAGGCGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCACTGTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCACACACTGCAACAAATTTGTTTAATGAATACATAATGGAAGGACTTGCTGGGAAAACAGTCTTGCTCGTGACTCATCAAGTTGACTTCCTTCCTGCATTTGATTCTGTTTTGTTGATGTCAGATGGGGAAATCATAGAAGCTGCTCCTTATCATCATTTGTTGAGCTCAAGCCAAGAATTTCAGGACCTTGTGAATGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTCTGGACGTTACTTCTCCGCAGAAACATTCAAATAGTCCTAGAGAAATTAGAACAACATCTACTGAGCAGCAATATGAAGCATCAAAAGGTGACCAATTGATTAAGCAAGAAGAAAGAGAAAAAGGAGACCAAGGGTTCAAACCGTATATACAGTATCTGAATCAGAACAAAGGATATATATACTTCTCTGTGGCTGCACTTTCTCACTTAACATTTGTGGTTGGCCAAATATTACAAAACTCATGGATGGCCGCTAGTGTTGACAATCCTCAAGTCAGCACTTTGCAATTGATTCTTGTTTACTTGTTGATTGGAGTTATTTCAACATTATTCTTGTTGATTAGAAGTCTTTTTGTGGTTGCTTTGGGCCTTCAATCATCAAAGTCTTTATTTTCACAGCTACTGAACTCCCTTTTTCGTGCCCCCATGTCATTTTATGACTCCACTCCTTTAGGAAGGATACTTAGCAGGGTCTCCTCAGATCTCAGCATTGTGGACCTTGATGTCCCATTCGCCTTTGTTTTTGCTGTGGGAGCTACTATGAATTGCTACGCTAATCTAACTGTTTTAGCTGTTGTTACATGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCAATCCACCTGCAGAAATATTACTTTGCCTCTGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTTGCTAACCATCTTGCTGAATCTGTTGCTGGAGCTATGACAATAAGGGCATTTGAGGAGGAAGATCGTTTTTTTGAGAAAAATCTTGATCTAATTGATATCAATGCAAGTCCTTACTTCCATGGTTTTGCAGCGAATGAGTGGTTGATTCAAAGATTAGAATCAGTGAGTGCTGTTGTTCTTGCATCTGCGGCAGTGTGCATGGTTGTACTTCCACCTGGAACTTTCTCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGGCTTTCACTTAACATGTCCTTGGTATTTTCAATTCAAAATCAATGCAACATAGCAAATTTTATAATATCAGTGGAGAGGCTAAATCAGTATATGCATATACCAAGTGAGGCTCCAGAAGTAATAGAAGAAAACCGTCCTCCTGTGAATTGGCCAGTTGCTGGTAGAGTACAAATAAATGAATTGCAGATACGTTACAGGCCTGATGCACCACTAGTACTCCGTGGAATCACATGCACATTTGAAGGAGGGCACAAAATTGGTATTGTTGGCCGGACAGGCAGTGGGAAGTCTACTCTTATAGGTGCCTTATTCCGTCTAGTGGAGCCAGCAGGTGGAAAAATCAGTGTTGATGGCATTGACATTTGCTCCATTGGTCTCCATGATTTGAGGTCGCGTTTTGGTATAATACCTCAGGATCCTACCCTTTTTAATGGGACAGTCAGATACAATATGGACCCCTTAACTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGCCAGTTGCAAGAGGCTGTCCAAGAGAAAGAAGAGGGATTAGACTCTTCAGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGACAAAGGCAGCTATTCTGTTTGGGGCGTGCTCTTCTCAGGCAAAGTAGGATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTTTGCAGAAAACAATTAGGACCGAGTTTGCAGATTGTACAGTGATCACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACCAAGGTTCTTGCCATAAGTGATGGGAAACTGGTGGAGTATGATGAGCCAATGAACTTGATAAAGAGAGAAGGATCACTGTTTGGGAAGCTTGTTAAGGAATATTGGTCTCATTTTCAGTCTGCAGAATCTCATTGA 4416 0.4069 MAGFGSMFCGESGFCSDFRLLIDPSTCVNHLLISCFDVLLLIMLVFIMIQKSTLKPSRGLIQVQRYSYFQLVSAIANGVLGLAILCFGIWVLEERLRKSQTSLPLNWWLLEIFHGLTWLLVTLTISLKLKKLPRAWTRLFSVLIFLVSGIFFASSLFYAISSRELSLKIASDILSFLGAILLLLCTYKESKHRDTDSEVDESLYAPLNGESNKNDSISYVTPFAKTGFFGKMSFWWMNPLMKIGKEKTLQDEDIPRLREEDRAESCYLLFLDQLNRRKHKDQSSQPSVLRTIILCHWKEILISGFFAMLKVLALSSGPLLLNSFILVAEGNESFKYEGFVLAISLFFIKNIESLSQRQWYFRCRLIGLKVRSLLTAAIYKKQLRLSNSARLMHSGSEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFRAVGWATIASLVVIVITVLCNTPLAKLQHKFQSKLMVTQDERLKACSEALVNMKVLKLYAWEANFRSAIERLRNEELKWLSAVQLRKAHNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVIIQAKVAFTRILKFLEAPELQSANTTQRCLNENKRGSILIKSADFSWEDNLSKPTLRNINLEVRPGQKVAICGEVGSGKSTLLAAILREIPNTEGTIEVYGKFAYVSQTAWIQSGTIRENILFGAAMDAEKYQVTLHRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEIIEAAPYHHLLSSSQEFQDLVNAHKETAGSDRLLDVTSPQKHSNSPREIRTTSTEQQYEASKGDQLIKQEEREKGDQGFKPYIQYLNQNKGYIYFSVAALSHLTFVVGQILQNSWMAASVDNPQVSTLQLILVYLLIGVISTLFLLIRSLFVVALGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFAFVFAVGATMNCYANLTVLAVVTWQVLFVSIPMIYFAIHLQKYYFASAKELMRMNGTTKSFVANHLAESVAGAMTIRAFEEEDRFFEKNLDLIDINASPYFHGFAANEWLIQRLESVSAVVLASAAVCMVVLPPGTFSSGFIGMALSYGLSLNMSLVFSIQNQCNIANFIISVERLNQYMHIPSEAPEVIEENRPPVNWPVAGRVQINELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKISVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNMDPLTQHSDQEIWEVLGKCQLQEAVQEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRQSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLIKREGSLFGKLVKEYWSHFQSAESH 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2332 1471 SMART AAA_5 1251 1443 IPR003593 -
Aed1g2332 1471 SMART AAA_5 643 816 IPR003593 -
Aed1g2332 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1225 1459 IPR003439 GO:0005524
Aed1g2332 1471 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 66 1471 - -
Aed1g2332 1471 CDD ABC_6TM_ABCC_D2 907 1200 IPR044726 GO:0140359
Aed1g2332 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 839 IPR027417 -
Aed1g2332 1471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1214 1452 IPR027417 -
Aed1g2332 1471 SUPERFAMILY ABC transporter transmembrane region 910 1205 IPR036640 GO:0005524|GO:0016021
Aed1g2332 1471 MobiDBLite consensus disorder prediction 847 883 - -
Aed1g2332 1471 Pfam ABC transporter 1242 1390 IPR003439 GO:0005524
Aed1g2332 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 919 1188 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2332 1471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 839 IPR003439 GO:0005524
Aed1g2332 1471 Pfam ABC transporter 634 768 IPR003439 GO:0005524
Aed1g2332 1471 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 66 1471 - -
Aed1g2332 1471 Gene3D - 611 845 IPR027417 -
Aed1g2332 1471 Pfam ABC transporter transmembrane region 909 1161 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2332 1471 Pfam ABC transporter transmembrane region 300 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2332 1471 Gene3D ABC transporter type 1, transmembrane domain 273 598 IPR036640 GO:0005524|GO:0016021
Aed1g2332 1471 Gene3D ABC transporter type 1, transmembrane domain 873 1206 IPR036640 GO:0005524|GO:0016021
Aed1g2332 1471 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Aed1g2332 1471 Coils Coil 1465 1471 - -
Aed1g2332 1471 MobiDBLite consensus disorder prediction 849 879 - -
Aed1g2332 1471 CDD ABCC_MRP_domain1 616 816 - -
Aed1g2332 1471 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 301 581 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed1g2332 1471 CDD ABCC_MRP_domain2 1223 1443 - -
Aed1g2332 1471 Gene3D - 1208 1460 IPR027417 -
Aed1g2332 1471 SUPERFAMILY ABC transporter transmembrane region 289 594 IPR036640 GO:0005524|GO:0016021
Aed1g2332 1471 CDD ABC_6TM_ABCC_D1 302 589 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2332 Aed-Chr1 19331245 19339552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2332 614 861 Calmodulin-binding Proteins AT2G36910 31.111 5.94e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2332 K05666 - gmx:100811468 2710.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2332 1 19331245 19339552 Aed1g2332 1 19331245 19339552 ECH
Aed7g0687 7 5085837 5092814 Aed1g2332 1 19331245 19339552 PCT