Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2312 ATGTTATGTAGTAAAACAGTTTCCAACAGTATTTTTCCATGCCGCTTCCGAGAAACATGTATGCAGGTTCTCTCTCTCTGCAACTCACAATCCCTGAAGGAGGGAGCATGTGTTCATAGCCCAATCATCAAAGTGGGTCTTCAACATGACTTGTATTTGAACAACAATTTGTTGTCTTTGTATGCTAAATGCTTTGGAGCTGGACAAGCACGCCATTTGTTTGATGAAATGCCTCATAAGGATGTTGTGTCATGGACTACGCTTCTTTCTGCTCACACCAAGAACAAGCATCATTTTGAGGCCCTTGAATTGTTTGACATGATGCTGGGTTCTGGTCAATGCCCCAATGAGTTCACCTTGTCCAGTGCCTTAAGATCGTGTTCTGCCTTGGGAGAGTTTGAGTTTGGAGCTAAGATTCATGCCTCTGTGGTAAAGCTTGGGTTTGAGCTGAATCCGTTTCTGGGTACCACTTTGGTTGATTTGTACACCAAGTGTGATTGCACTGTGGAAGCACCAAAGCTGCTTGCGTTTGTGAAGGATGGTGATGTTGTGTCTTGGACAACAATGATCTCTTCATTGGTGGAGACTGGTAAATTGAGTGAAGCTCTACAACTCTACGTCAAAATGATTGAAGCCAGTGTTTATCCAAATGAGTTCACATTTGTTAAAATCTTAGGCGTGTCTTCTTTTATTGGTTTGGGATTGGGTTATGGGAAAGTACTGCATGCACAGTTGATCAGACTTGGTGTCGAAATGAATTTGGTGTTGAAGACAGCCATTGTTGATATGTATGCAAAATGTAGACAGATGGAAGATGCCATTAAGGTCTCAAATCAGACACCTGAATACGATGTGTGCTTATGGACTACCATAATCTCTGGATTTGTTCAAAATTTGCAGGTTAGAGAGGCTGTCATTGCATTGGTTGATATGGAATTGTCTGGAATTCTACCAAATAATTATACATATGCTAGTTTATTGAATGCTAGCTCCTCAGTTTTATCATTGGAGCTAGGGGAACAGATTCATTCAAGGGTTATCACGGTGGGATTGGAGGATGATATTTATGTAGGAAATGCACTGGTTGATATGTACATGAAATGCTCCCACACCACAACAAATGGTGTGAAAGCTTTTAGAGGGATAGCCTCACCAAATGTCATCTCTTGGACTTCTTTGATTGCTGGTTTTGCAGAACATGGTTTAGAAGAAGAATCTGTTCAGTTGTTTGCTGAGATGCAAGCAGCTGGAGTGCAACCAAATACCTTTACGCTATCTACTATCCTTGGAGCTTGTAGCAAAATTAAATCTTGTATTCAAACAAAGAAACTCCATGGACATATCATAAAAACAAAAGCAGATGTAGATATGGCTGTTGGGAATGCTCTTGTAGATGCTTATGCTGGAGGGGGGATGGCAGATGAAGCATGGTCTGTTATTGGCATGATGAACCATAGAGATATCATCACTTACACAACTTTAGCAGTAAGATTAAACCAACAGGGAGATCAAGAAATGGCATTAAAAGTCATCACTCATATGTGCAATGATGAGGTTAAGATGGATGAATTTAGCTTTGCAAGTTTTATATCAGCTGCAGCTGGCTTAGGCACTATGGAAACTGGAAAGCAACTCCATTGTTATTCTTTCAAATCAGGTTTCGAGAGATGTAACTCAGTTTCAAATAGCCTAGTTCACTTGTACAGCAAGTGTGGTAGCATGCGCGATGCATACAGAGCTTTCAAAGATATAACTGAGCCAGATATAGTGTCATGGAATGGTTTGATCTCTGGATTGGCATCAAATGGACATATATCCGATGCTCTTTCTGCCTTTGATGACATGAGGTTAGCGGGAGTTAAACCCGATTCTTTCACATTCTTATCACTGATTTTTACTTGCAGCCAAGGTAGTTTATTGAATCTGGGTCTTGATTATTTCCATTCTATGGAAAAAACATATCAAATAACACCAAAGTTGGATCACTATGTGTGTTTAGTTGATCTCCTCAGTAGAGGTGGCCGCCTAGAGGAAGCTATGGGAGTTATTGAAACAATGCCTTTCAAGCCAGATTCTGTAACTTATAAAACCTTATTGAATGCTTGCAACTTACTTGGAAATGTGCTACTGGGAGAAGATATGGCAAGAAGATGTCTTGAGCTTGATCCATATGATCCTGCAATATACTTGCTGCTGGCAAGTTTGTATGACAATGCTGGACTCTCTGATTTCGGTGACAAGACTCGCAAGCTGATGAGAGAAAGAGGCTTAAGAAGAAGTCCCAGGCAGTGTTGGATGGAGGTAAAAAGTAAGATTTATCTCTTCGATGCAAGAGAGAAGATAGGTAAGGATGAGATTAATGAAAAGCTAGAGTTTCTTATAACTGAGATAAAGAATAGAGAGTATCCATACCAAGAGAGTGAAGATAAGTTATACCACTCAGAGCAATTGGCCCTAGCATTTGGTGTTCTTAGTGTAGCAACTCTGGCTCCAATACGCATAAACAAAAATTCACTTATCTGCACTCACTGTCATTCTTTTATAATGCTTGTGACACAATTTGTTGATAGGGAGATAATTGTGAAGGATAGGAAACGATTCCATTTCTTTAAGGACGGCCACTGTTCATGTAGAGGTAACTCATAA 2646 0.401 MLCSKTVSNSIFPCRFRETCMQVLSLCNSQSLKEGACVHSPIIKVGLQHDLYLNNNLLSLYAKCFGAGQARHLFDEMPHKDVVSWTTLLSAHTKNKHHFEALELFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGFELNPFLGTTLVDLYTKCDCTVEAPKLLAFVKDGDVVSWTTMISSLVETGKLSEALQLYVKMIEASVYPNEFTFVKILGVSSFIGLGLGYGKVLHAQLIRLGVEMNLVLKTAIVDMYAKCRQMEDAIKVSNQTPEYDVCLWTTIISGFVQNLQVREAVIALVDMELSGILPNNYTYASLLNASSSVLSLELGEQIHSRVITVGLEDDIYVGNALVDMYMKCSHTTTNGVKAFRGIASPNVISWTSLIAGFAEHGLEEESVQLFAEMQAAGVQPNTFTLSTILGACSKIKSCIQTKKLHGHIIKTKADVDMAVGNALVDAYAGGGMADEAWSVIGMMNHRDIITYTTLAVRLNQQGDQEMALKVITHMCNDEVKMDEFSFASFISAAAGLGTMETGKQLHCYSFKSGFERCNSVSNSLVHLYSKCGSMRDAYRAFKDITEPDIVSWNGLISGLASNGHISDALSAFDDMRLAGVKPDSFTFLSLIFTCSQGSLLNLGLDYFHSMEKTYQITPKLDHYVCLVDLLSRGGRLEEAMGVIETMPFKPDSVTYKTLLNACNLLGNVLLGEDMARRCLELDPYDPAIYLLLASLYDNAGLSDFGDKTRKLMRERGLRRSPRQCWMEVKSKIYLFDAREKIGKDEINEKLEFLITEIKNREYPYQESEDKLYHSEQLALAFGVLSVATLAPIRINKNSLICTHCHSFIMLVTQFVDREIIVKDRKRFHFFKDGHCSCRGNS 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2312 881 Gene3D Tetratricopeptide repeat domain 643 720 IPR011990 GO:0005515
Aed1g2312 881 Pfam PPR repeat family 182 222 IPR002885 -
Aed1g2312 881 Pfam PPR repeat family 385 433 IPR002885 -
Aed1g2312 881 Pfam PPR repeat family 80 127 IPR002885 -
Aed1g2312 881 Pfam PPR repeat family 587 633 IPR002885 -
Aed1g2312 881 Pfam PPR repeat family 284 329 IPR002885 -
Aed1g2312 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Aed1g2312 881 TIGRFAM PPR: pentatricopeptide repeat domain 590 624 IPR002885 -
Aed1g2312 881 TIGRFAM PPR: pentatricopeptide repeat domain 184 218 IPR002885 -
Aed1g2312 881 TIGRFAM PPR: pentatricopeptide repeat domain 83 117 IPR002885 -
Aed1g2312 881 TIGRFAM PPR: pentatricopeptide repeat domain 388 422 IPR002885 -
Aed1g2312 881 PANTHER OS07G0578800 PROTEIN-RELATED 269 770 IPR045215 GO:0003723|GO:0009451
Aed1g2312 881 PANTHER OS07G0578800 PROTEIN-RELATED 168 269 IPR045215 GO:0003723|GO:0009451
Aed1g2312 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Aed1g2312 881 Pfam DYW family of nucleic acid deaminases 808 879 IPR032867 GO:0008270
Aed1g2312 881 PANTHER OS03G0861900 PROTEIN 31 167 - -
Aed1g2312 881 PANTHER OS03G0861900 PROTEIN 269 770 - -
Aed1g2312 881 PANTHER OS03G0861900 PROTEIN 168 269 - -
Aed1g2312 881 Pfam PPR repeat 663 686 IPR002885 -
Aed1g2312 881 Pfam PPR repeat 562 584 IPR002885 -
Aed1g2312 881 Pfam PPR repeat 461 486 IPR002885 -
Aed1g2312 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Aed1g2312 881 Gene3D Tetratricopeptide repeat domain 232 333 IPR011990 GO:0005515
Aed1g2312 881 Gene3D Tetratricopeptide repeat domain 334 442 IPR011990 GO:0005515
Aed1g2312 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Aed1g2312 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Aed1g2312 881 Gene3D Tetratricopeptide repeat domain 136 231 IPR011990 GO:0005515
Aed1g2312 881 PANTHER OS07G0578800 PROTEIN-RELATED 31 167 IPR045215 GO:0003723|GO:0009451
Aed1g2312 881 Gene3D Tetratricopeptide repeat domain 443 543 IPR011990 GO:0005515
Aed1g2312 881 Gene3D Tetratricopeptide repeat domain 16 135 IPR011990 GO:0005515
Aed1g2312 881 Gene3D Tetratricopeptide repeat domain 544 641 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2312 Aed-Chr1 19168148 19170793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2312 101 877 Glycoside Hydrolase AT3G49170 32.178 1.77e-141 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2312 - - gmx:100791770 1585.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2312 1 19168148 19170793 Aed1g2312 1 19168148 19170793 ECH