Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2303 ATGCAGGTCATTGGTGTGATCTCCTTAGTTCTGAAATTGGGATCACTGAATGTAAAGGTAGCAGAATGCAGAGTAATTAGTAAATTGGGCAACATTGAATACCCTGCCATAAATTGCCGAAAACATAGTGCAATTTTGACAGATTTTGGTGGGGTTGGTGATGGGAAAACCTCAAACACCAAGGCCTTTCAATCTGCAATAAGCAAACTCAGCCAATTTGCATCTGATGGTGGTGCACAACTTATTGATGAATCAGAATGGCCTCAACTTTCAGTACTACCTTCTTATGGAAGGGGAAGAGATGCTCCCGGTGGAAGGTTTAGCAGTCTAATTTTTGGGACTAATCTCACCGATGTTGTAATAACTGGTCAAAATGGTACGATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGGACCAATTGACTCTCATCAGGCCATACTTGATAGAGATAATGTACTCTGATCAAATCCAAATATCAAATCTCACTTTGCTCAACTCCCCATCCTGGTTTGTCCATCCAATTTACAGCAGTAACATAATAAAAGGGCTTACCATTCTTGCACCTGTGGACTCTCCCAACACAGATGGAATTGACCCAGATTCATGTACAAACACTTGGATTGAAGACTGCTACATTGTTTCTGGTGATGACTGTGTGGCAGTAAAAAGTGGTTGGGATGAGTATGGAATTAAATTTGGGAAGCCAACACAACACTTAGTCATTAGAAGGCTCACATGTATATCCCCTGATAGTGCCATGATTGCTTTAGGGAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAAACATCACTGCCATCAACACTCAATCAGCTGTTAGAATCAAATCAGCAGTTGGCAGAGGTGGATTTGTGAAGGACATATTTGTCAAAGGAATGATCCTTAACACCATGAAATATGTGTTCTGGATGACTGGCTCTTATGGTTCACACGCTGACAATGGCTTTGACCCCAAAGCACTTCCTAATATTAGTGGAATAAATTACAGAGATGTTATTGCAAAGAACGTGACATATTCTGCAAAACTTGAAGGCATTTCTAATGACCCTTTCAAGGGAATATGCATTTCTAATGTGAATATCCAAGTGAGTGAACAACAAAAGAAGCTTCAATGGAATTGCACTGATGTTGCTGGAGTTACGAGCAATGTCACTCCTAGCCCTTGTGAGTTGCTGCCAGAGAAAGGGAAATTCGATTGTCCTTTTCCAACTGACAAATTGCCCAATGAAAATGTTCAGTTGAAGACTTGTTCCCTTCAATAA 1299 0.408 MQVIGVISLVLKLGSLNVKVAECRVISKLGNIEYPAINCRKHSAILTDFGGVGDGKTSNTKAFQSAISKLSQFASDGGAQLIDESEWPQLSVLPSYGRGRDAPGGRFSSLIFGTNLTDVVITGQNGTIDGQGSYWWDKFHKDQLTLIRPYLIEIMYSDQIQISNLTLLNSPSWFVHPIYSSNIIKGLTILAPVDSPNTDGIDPDSCTNTWIEDCYIVSGDDCVAVKSGWDEYGIKFGKPTQHLVIRRLTCISPDSAMIALGSEMSGGIQDVRAENITAINTQSAVRIKSAVGRGGFVKDIFVKGMILNTMKYVFWMTGSYGSHADNGFDPKALPNISGINYRDVIAKNVTYSAKLEGISNDPFKGICISNVNIQVSEQQKKLQWNCTDVAGVTSNVTPSPCELLPEKGKFDCPFPTDKLPNENVQLKTCSLQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2303 432 Gene3D - 29 398 IPR012334 -
Aed1g2303 432 Pfam Glycosyl hydrolases family 28 110 390 IPR000743 GO:0004650|GO:0005975
Aed1g2303 432 PANTHER PECTIN LYASE-RELATED 7 82 - -
Aed1g2303 432 PANTHER PECTIN LYASE-RELATED 83 430 - -
Aed1g2303 432 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 7 82 - -
Aed1g2303 432 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 83 430 - -
Aed1g2303 432 SUPERFAMILY Pectin lyase-like 42 405 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2303 Aed-Chr1 19125707 19127777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2303 32 431 Glycoside Hydrolase AT3G48950 65.675 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2303 - - gmx:100779166 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2303 1 19125707 19127777 Aed1g2303 1 19125707 19127777 ECH