Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2256 ATGGATTCAAGAGTAGTAGTTCAAAGTGAAGTGAATGAGAATGATGAACGTTACCCCCACATTGTTGCCTCAGAGCAAGTGACACATGGTGCAGAAGATCATGAGAAGAAGTCTGTTCTGAATAAGGTAAAGAAAAAGGCTAAGAAAATAAAGGATACGATTAAGAAGCATGGCCATCAAGTCCTTGATCGTGGTCTAGATGACAATAGCAATGAAGATCAACACACCCTTGATGATGATGACGACTTAGATGAGGATGAAGAAATGGACGAAGCCCCACAAGTTCATGAAACACCAATTCATGAGAGTGAAGATGTTAAAACTGCTACACCAACAACATCTGAGCAAGTGAAAAATTTAGGGAAGTCAGGAATTGATTTTGGAGGCACAACAATTACAGGAGAAGAGCCTCGTGAAGATGCACTTCTTGGAGGCGTTTCATCAACTACTGAGATTGATCAAAACATAGCCAAAACATTTTCTGTGGAAGAGAAGGCAGAGCCACCAAAGGACAATTTGGAGAGGTCAATAGGCTTGGAGGCATGTACTTCTCCCGATTATCAAATCAAACTCACTGATCCAAGTGCCACAGTTACAGGAAAGGATGAAATAGAAGAAGAAATCACACCAATTAAGGAATCTTTTGCGAAAATGAATGTGCAGCCAACTGTTGTTGATGATTCTGAATACCCTCTTGCTGAAAACCATGATCAGTTTGTGCCACACCTCTCTGCTGCTGCTGCTGCAACACAAACTCAGTATCCTTCTGCTGAAAGTCGTCATGATCAGTTCAATCAGGAAACATTAACATCCACAAATATCAACAGAACCATCGCGACCACAGTTGAAGAGCAATCAGTCTATGAAGCAAACACTGGCCAAGTTGTCTCTCCTAAAGATGTCATAGGTTCTGAGGTAGGTTCAGGAGAGAAAGATGAGGTGGTAACAAATGAAGAGCAACACAAAAGTGGGAAGAACATTGCTCACTCTCTGTCAGAGAAATTAGGTCCAGTTTATGAGAAGGTTGCAGGAGTAGGAAGTGCAGTTAAGTCCAAAGTGACTGGAACTAGCACTGAGACAAAAAATGAGGTTTCTGTGACGGACTATTTGGCTGAGAAGCTAAGGCCTGGTGAAGAGGACAAGGCACTTTCTGAGGTAATTTCAGAAGCTCTACATAAGAGGAAGGAAGAGCCAATGAAAAATATTGAGCAACACTTGGATGAGAAAATGTGTGAAGAGAGCTGTGTCAAGAGTCCAGGGAAAGGTGTGGTTGGCAAGCTTAAGAATGCTGTTGGCTCTTGGTTTGGCAAATCTGAGGAAAAAGGAGGTGAAGATTTATCCAATTCTGCTGCAGAAGTGGAACAGGTGCACCAGCTTCTATCTCTTTCGCAAAACTTGGTTGTTGATTTGATGAATATCCATCGACACGTCAGCACAGTGGGCTTCTGGAAGCTTCCACTGCAAGGAAACGCGGTTCTACCATTGGCTAAATCGCGATTATGTAACCATCCGTTTGATGGTGACGGGTTTGAATTTATTGAAGAGCCTTTGAAAAAAGTAGGTTCAGATTATGATTCCAATGTGGATGAAAGGCTCCATTTGAACAAAGATTGGGGCTTTAAGCAAAAGCAATTTTCACTTAGAAAAGGGTTCTTAGAAACTGTTAAGTTAGATGCTAAGAGAGTCCTTGAGGTTCTCCGGCAAGATGGTCCCGGTCTCGACGCGAGGTTGGTGTTAGGTGAGTTGCGTGTAAAGCCATCGGGGCTTCTTGTGAGGGAGGTTCTCTTTGGAATTTTGAAGAACATAAATTGTGAGAATAAAACTAGGTGTGCAAAGCTGGCATACAAGTTTTTTGTGTGGTGCAATCAGCAAGAGGGTTACCGGCACACTTTGAATGCATATCACTTAGTTTTGAACATATATGCTGAGTGTGAAGAGTTTAAGGCACTGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGGCTTCCAGCCACTGCTCGGACTTTCAATATATTGATTCGTACTTGTGGCGAGGCAGGCTTGGCTAAGAAATTGGTGGAGAGTTTCATAAAATCAAAGACGTTTAACTTTAGGCCTTTTAAGCACTCCTACAATGCAATCCTGCATGGTCTTCTTGTTTTAAACCAGTACAAGTTGATTGAGTGGGTTTATCAACAGATGTTGGTTGATGGATTTTCTTCAGATATTTTAACTTATAATATTGTCATGTATGCCAATTACAGACTTGGAAAGTTGGATCAGTTTCACAGACTGCTTGATGAAATGGGTAGAAATGGTTTTTCTCCAGATTTTCATACCTTTAATATTCTTCTTCATGTTCTTGGCAAAGGTGACAAGCCACTTGCAGCTCTCAATCTTTTAAATCACATGAGAGAAATGGGTATAGATCCAACTGTGCTTCATTTCACTACATTGATAGACGGACTCAGCAGAGCTGGGAATCTGGATGCTTGCAAATATTTTTTTGATGAAATGATAAAGAATGGATGCATGCCAGATGTCGTGGCTTACACTGTAATGATAACTGGATATGTCATGGCTGGTGAGCTTGAGAAAGCACTGGAAATGTACCAAGATATGATTTCTAGACAACAAATTCCAAATGTTTTTACATACAATTCCATAATTCGGGGATTATGTATGGCAGGGAAATTTGATGATGCGTGCTCAATGCTTAAGGAAATGGAGACCAAAGGTTGTAGTCCAAATTCTGTTGTCTATAATACATTAGCGAGTTGTTTGAGGAATGCCGGAAGGACTGCTGATGCTCATGAAGTGATAAGACAGATGACGGAGAAGGGGAAGTATGCCAACATACATTCAAGATTCAAAGGGCATAAGGCTTAG 2868 0.4125 MDSRVVVQSEVNENDERYPHIVASEQVTHGAEDHEKKSVLNKVKKKAKKIKDTIKKHGHQVLDRGLDDNSNEDQHTLDDDDDLDEDEEMDEAPQVHETPIHESEDVKTATPTTSEQVKNLGKSGIDFGGTTITGEEPREDALLGGVSSTTEIDQNIAKTFSVEEKAEPPKDNLERSIGLEACTSPDYQIKLTDPSATVTGKDEIEEEITPIKESFAKMNVQPTVVDDSEYPLAENHDQFVPHLSAAAAATQTQYPSAESRHDQFNQETLTSTNINRTIATTVEEQSVYEANTGQVVSPKDVIGSEVGSGEKDEVVTNEEQHKSGKNIAHSLSEKLGPVYEKVAGVGSAVKSKVTGTSTETKNEVSVTDYLAEKLRPGEEDKALSEVISEALHKRKEEPMKNIEQHLDEKMCEESCVKSPGKGVVGKLKNAVGSWFGKSEEKGGEDLSNSAAEVEQVHQLLSLSQNLVVDLMNIHRHVSTVGFWKLPLQGNAVLPLAKSRLCNHPFDGDGFEFIEEPLKKVGSDYDSNVDERLHLNKDWGFKQKQFSLRKGFLETVKLDAKRVLEVLRQDGPGLDARLVLGELRVKPSGLLVREVLFGILKNINCENKTRCAKLAYKFFVWCNQQEGYRHTLNAYHLVLNIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKKLVESFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLVDGFSSDILTYNIVMYANYRLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIDPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCMPDVVAYTVMITGYVMAGELEKALEMYQDMISRQQIPNVFTYNSIIRGLCMAGKFDDACSMLKEMETKGCSPNSVVYNTLASCLRNAGRTADAHEVIRQMTEKGKYANIHSRFKGHKA 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2256 955 SUPERFAMILY TPR-like 840 940 IPR011990 GO:0005515
Aed1g2256 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 910 944 IPR002885 -
Aed1g2256 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 875 909 IPR002885 -
Aed1g2256 955 Pfam Pentatricopeptide repeat domain 625 678 IPR002885 -
Aed1g2256 955 Pfam PPR repeat 703 732 IPR002885 -
Aed1g2256 955 Pfam PPR repeat family 839 887 IPR002885 -
Aed1g2256 955 Pfam PPR repeat family 735 781 IPR002885 -
Aed1g2256 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 735 769 IPR002885 -
Aed1g2256 955 MobiDBLite consensus disorder prediction 303 324 - -
Aed1g2256 955 MobiDBLite consensus disorder prediction 50 138 - -
Aed1g2256 955 TIGRFAM PPR: pentatricopeptide repeat domain 738 770 IPR002885 -
Aed1g2256 955 TIGRFAM PPR: pentatricopeptide repeat domain 842 875 IPR002885 -
Aed1g2256 955 TIGRFAM PPR: pentatricopeptide repeat domain 912 943 IPR002885 -
Aed1g2256 955 TIGRFAM PPR: pentatricopeptide repeat domain 877 911 IPR002885 -
Aed1g2256 955 TIGRFAM PPR: pentatricopeptide repeat domain 809 841 IPR002885 -
Aed1g2256 955 TIGRFAM PPR: pentatricopeptide repeat domain 772 805 IPR002885 -
Aed1g2256 955 PANTHER OS10G0506000 PROTEIN 532 954 - -
Aed1g2256 955 Gene3D Tetratricopeptide repeat domain 592 713 IPR011990 GO:0005515
Aed1g2256 955 MobiDBLite consensus disorder prediction 56 72 - -
Aed1g2256 955 MobiDBLite consensus disorder prediction 25 44 - -
Aed1g2256 955 MobiDBLite consensus disorder prediction 73 92 - -
Aed1g2256 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 840 874 IPR002885 -
Aed1g2256 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Aed1g2256 955 MobiDBLite consensus disorder prediction 25 40 - -
Aed1g2256 955 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 532 954 - -
Aed1g2256 955 MobiDBLite consensus disorder prediction 105 120 - -
Aed1g2256 955 Gene3D Tetratricopeptide repeat domain 798 870 IPR011990 GO:0005515
Aed1g2256 955 Gene3D Tetratricopeptide repeat domain 715 797 IPR011990 GO:0005515
Aed1g2256 955 Gene3D Tetratricopeptide repeat domain 871 942 IPR011990 GO:0005515
Aed1g2256 955 MobiDBLite consensus disorder prediction 305 324 - -
Aed1g2256 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 770 804 IPR002885 -
Aed1g2256 955 Pfam PPR repeat 800 832 IPR002885 -
Aed1g2256 955 Pfam PPR repeat 905 938 IPR002885 -
Aed1g2256 955 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 805 839 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2256 Aed-Chr1 18749599 18754480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2256 653 948 Miscellaneous Gene Families AT4G11690 28.716 2.95e-36 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2256 - - gmx:100792512 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2256 1 18749599 18754480 Aed1g2256 1 18749599 18754480 ECH