Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2247 ATGTTAGTATTCGGCGATGCAAGAGAGAAGAAGATAAAAGCCGAAGCGCGCGAAATCCAGCATCGGCGGTGCCTCAATGGGAAAGCAAAAGCAACAAGTCATTTCCCGCTTCTTCGCTCCCAAATCCAAATCTCCTCCGTCAGCAACCACCCATTCCTCCCCTCCTCCTCCCACTCCCAAAATCTCCGCCACCGTCACTTTCTCCCCCGCCAAACGCCGCCTAACCTCCAACCTCACCCCCCTCGCAAACACCCCAAACTCCACGAACCTTCTCCCCCCTCACTCCACCAACGCTTCCTCCAGAAGCTTCTTGAACCTTCTTCCACACCGCATCAACATCAACATGAACACCATGTTGCTTCTTCTTCCTCTTCCAAACCCCCAACATACACTCCCCTGGAGCAGCAGGTCCTGGACCTGAAAGCCAAACACCCCGACGTCCTCCTCATGGTCGAGGTCGGTTACAAGTACCGTTTCTTTGGCCAGGACGCCGAACACGCCGCCAGAGTCCTCGCCATTTACGCACACATGGACCGCAACTTCTTAACCGCCAGCATACCAACTTTTCGACTCAATGTCCACGTCAGGAGGCTTGTCAGCGCCGGCTACAAGGTCGGCGTCGTCAAGCAGACCGAGACCGCCGCCATCAAGGCCCACGGCTCCAACCGCACCGCGCCATTCGAGCGTGGCCTGTCGGCGCTCTACACCAAGGCCACGCTCGAGGCGGCGACGGACCTGGGGGGAGGAGGGGAGGAGGACGGGTGCGCCGGAGAGAGCAATTACTTGCTCTGTGTGGTGGAGAAGACTGTTTTGGATGTAAAGGGTGGTGGTTTTGATGTGAGGGTTGGGATTGTTGCTGTGGAGATATCGACCGGGGATGTTGTTTATGGGGAGTTTTCTGATAGCTTTCTCAGGACTACGCTTGAGGCTGTTCTTCTCAACTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCCAAGCAAACGGAGAAGTTATTGCTGGAATTTGCTGGACCTGCCTCAAATGTTCGTGTGGAGCATATTTCACGAGATTGCTTCATTGATGGGGGTGCTCTTGCTGAAGTTATGACCTTGTACGAGAACATGCATGTAGACAGTCCATCAGATTCAATACAAAGCAATGATTTGATTGAGAACAGAAGTCAGCAGTTAATAATCAAGGAGGTGATGAACATGCCAGATTTAGCTGTCCAAGCTTTGGCCTTAACCATTCGCCATTTAAAGGAATTTGGTTTTGAAAGAATTATGTGTTCAGGAGCTTCTATAAGGCCCTTCTCAAGTAATACGGAAATGACCCTCTCAGCCAATGCACTTCAACAACTGGAGGTTTTGAAAAATAACAGTGATGGATCTGAGATTGGTTCCTTGCTGCAAATTATGAATCGTACACTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTATCTCACCCATTGTGTGATCAAACCTTAATTTCTGCTCGTCTTCATGCTGTATCTGAAATTGCAGAGTCCATGGGATCTTGTAACAGTATGAAGAATCTTGGACATGTTGAGGAAGATCCTGACGTAGCAATCGTGCAACCTGAGTTAGCATTCATACTTTCACTGGTTTTGACAACTCTTGGCCGAGCACCTGATATACAACGTGGAATTACTAGAATTTTCCATTGCACTGCTACCCCATCTGAGTGCAAGGAAATGGTTGAGAATTTTGTTGCAGTAATTCAAGCTATTTTGTCTGCTGGAAAACAGCTTCAACAACTTAGCATAGGAGAGGGGAATAATAACACATTGCGCTCTAATCTGTTAAAAAAGTTAATTTTTACTGCTTCCTCTGACAGTGTTATTGGCAATGCTGCAAAAATGTTGTCATCTTTAAACATAGACTCTGCTGATCAAGGAGATCTAACAAAATTGATTATTGCATCGGAAGGACAATTCCCAGAGGTCATTAGAGCTCAGAAGGCTTTCAAGCTGGCAGTGGAACAATTAGATTCGTTGATTGACTTCTATCGCAAACGGCTTGGAATAAAAAAATTGGAATTCATTAGTATTTCTGGAACAACCCATTTGATTGAGTTATCAACTGATGTAAAGGTTCCTTCAAACTGGGTCAAGGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGACAAGCTATCATTAGCAAGAGAGGAGCTCACTGTTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGACTTCAGTAAACACTATGCTGAATTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTATTTCAAGAAATAAGGGTTATGTTCGCCCAGTGTTTGTAGATGATCATGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAGACAATTTTGTCCCAAATGATACAAACATGCATGCAGATGGAGAGTACTGTCAGATTATTACTGGACCGAATATGGGGGGGAAAAGTTGTTATGTCCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTTCATGTCCTGGACAGGATCTACACCCGGATGGGCGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTCCATAGTTGCACAGAACATTCACTGGTTATCATTGACGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTTATGCGACATTGCATTATCTTCTGAAGCAAAAAAAAAGCATGGTCCTCTTTGTCACTCACTATCCCAAGATTGCCAGCCTGGCAACTGAATTTCCTGGCTCTGTGGCAGCATATCATGTGTCACATCTGACATCACCTGATGCAAGTAAAAATTCCAATTTGGATCATGATGTCACTTATCTTTACAAGCTCGTACCTGGTGTTTCAGAGAGGAGTTTCGGATTTAAGGTTGCCCAGCTTGCACAGTTACCATCACACTGCATCAGTCGAGCCATTGTCATGGCTTCTAAATTAGAAGCACTAGTGAACAGTAGAATACATAGTAGATCAAGAAAGGAGCTATTATTGGACATGCTGTTGATTGGTCAAGAACAAGAACAGATCAATGCAGATGCAGTATGTGTGAGGATTACACGCAGAAGCAGGGTTCGGGTCTCCAATGTAGATAATCGTTTAAGTTAA 3252 0.4597 MLVFGDAREKKIKAEAREIQHRRCLNGKAKATSHFPLLRSQIQISSVSNHPFLPSSSHSQNLRHRHFLPRQTPPNLQPHPPRKHPKLHEPSPPSLHQRFLQKLLEPSSTPHQHQHEHHVASSSSSKPPTYTPLEQQVLDLKAKHPDVLLMVEVGYKYRFFGQDAEHAARVLAIYAHMDRNFLTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNRTAPFERGLSALYTKATLEAATDLGGGGEEDGCAGESNYLLCVVEKTVLDVKGGGFDVRVGIVAVEISTGDVVYGEFSDSFLRTTLEAVLLNLSPAELLLGDPLSKQTEKLLLEFAGPASNVRVEHISRDCFIDGGALAEVMTLYENMHVDSPSDSIQSNDLIENRSQQLIIKEVMNMPDLAVQALALTIRHLKEFGFERIMCSGASIRPFSSNTEMTLSANALQQLEVLKNNSDGSEIGSLLQIMNRTLTIFGSRLLRHWVSHPLCDQTLISARLHAVSEIAESMGSCNSMKNLGHVEEDPDVAIVQPELAFILSLVLTTLGRAPDIQRGITRIFHCTATPSECKEMVENFVAVIQAILSAGKQLQQLSIGEGNNNTLRSNLLKKLIFTASSDSVIGNAAKMLSSLNIDSADQGDLTKLIIASEGQFPEVIRAQKAFKLAVEQLDSLIDFYRKRLGIKKLEFISISGTTHLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVVTALDKLSLAREELTVACRAAWNSFLRDFSKHYAEFQAAVQALAALDCLHSLAIISRNKGYVRPVFVDDHEPVQIQICSGRHPVLETTLQDNFVPNDTNMHADGEYCQIITGPNMGGKSCYVRQVALIAIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSHILHSCTEHSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKKSMVLFVTHYPKIASLATEFPGSVAAYHVSHLTSPDASKNSNLDHDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHSRSRKELLLDMLLIGQEQEQINADAVCVRITRRSRVRVSNVDNRLS 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2247 1083 SMART mutATP5 829 1026 IPR000432 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 SUPERFAMILY DNA repair protein MutS, domain III 443 782 IPR036187 -
Aed1g2247 1083 Pfam MutS domain III 444 777 IPR007696 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 Pfam MutS family domain IV 657 736 IPR007861 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 110 1066 - -
Aed1g2247 1083 Pfam MutS domain V 832 1029 IPR000432 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 Gene3D MutS, connector domain 256 438 IPR036678 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 SUPERFAMILY DNA repair protein MutS, domain I 125 239 IPR016151 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 SMART DNAend 459 812 IPR007696 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 Pfam MutS domain II 260 336 IPR007860 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 ProSitePatterns DNA mismatch repair proteins mutS family signature. 910 926 IPR000432 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 PIRSF Msh6 123 1072 IPR017261 GO:0006298|GO:0030983
Aed1g2247 1083 Gene3D DNA repair protein MutS, domain I 120 246 IPR016151 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 1029 IPR027417 -
Aed1g2247 1083 SUPERFAMILY DNA repair protein MutS, domain II 257 330 IPR036678 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 110 1066 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Aed1g2247 1083 Gene3D - 441 777 - -
Aed1g2247 1083 Gene3D - 627 753 - -
Aed1g2247 1083 MobiDBLite consensus disorder prediction 107 131 - -
Aed1g2247 1083 MobiDBLite consensus disorder prediction 68 95 - -
Aed1g2247 1083 Pfam MutS domain I 131 241 IPR007695 GO:0005524|GO:0006298|GO:0030983
Aed1g2247 1083 Gene3D - 785 1065 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2247 Aed-Chr1 18698573 18706876 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2247 K08736 - gmx:100789883 1682.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2247 1 18698573 18706876 Aed1g2247 1 18698573 18706876 ECH