Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2228 ATGGCCGACGAGGACTATGATGATGTGGACATGGGGTACGAGGATGAGCCCCAAGAGCCTGAGATCGAGGAAGATGCAGAGGAAGATGTGGAGAACAATGAAATGGCTGGAGAGCCTATTGATGCCGAGGATAAGGAAGAGGAACAACCAGTGGAGCGGCCTCGGAAGACATCGAAATATATGACTAAGTATGAGCGTGCTAGGATTTTGGGCACCCGTGCTCTTCAAATCAGTATGAATGCACCTGTCATGGTTGAGTTGGAAGGGGAAACTGACCCACTTGAGATTGCTATGAAGGAGCTTCGAGAGAAGAAAATACCCTTTACAATTCGGCGCTACTTGCCTGATGGAAGCTATGAAGATTGGGGAGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGA 423 0.487 MADEDYDDVDMGYEDEPQEPEIEEDAEEDVENNEMAGEPIDAEDKEEEQPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELREKKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2228 140 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 59 114 IPR006111 GO:0003677|GO:0003899|GO:0006351
Aed1g2228 140 PIRSF RpoK/RPB6 1 131 IPR006111 GO:0003677|GO:0003899|GO:0006351
Aed1g2228 140 PANTHER DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B 1 140 - -
Aed1g2228 140 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 1 140 - -
Aed1g2228 140 PIRSF RPB6 1 131 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Aed1g2228 140 MobiDBLite consensus disorder prediction 1 58 - -
Aed1g2228 140 Gene3D - 3 131 IPR036161 GO:0003677|GO:0003899|GO:0006351
Aed1g2228 140 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 62 76 IPR020708 GO:0003677|GO:0003899|GO:0006351
Aed1g2228 140 SMART RNA_pol_Rpb6_2 55 108 IPR006110 GO:0003677|GO:0003899|GO:0006351
Aed1g2228 140 Pfam RNA polymerase Rpb6 57 108 IPR006110 GO:0003677|GO:0003899|GO:0006351
Aed1g2228 140 SUPERFAMILY RPB6/omega subunit-like 1 130 IPR036161 GO:0003677|GO:0003899|GO:0006351
Aed1g2228 140 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2228 Aed-Chr1 18583034 18586288 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2228 K03014 - gmx:100794926 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2228 1 18583034 18586288 Aed1g2228 1 18583034 18586288 ECH