Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2218 ATGGGTTGGGTGTTCAAGCAATTTTTATGTGCATTTCTTGTGTGGTGCACATTCCTTAGTGTATTATCTCATCCTGATGAAGGTCCAAAGTACAGATTTGTAAGAGAAGCAACATCAGCTCCAGCAATCTTAAGTTATGAGTACATAGTGATTGGTGGAGGAACATGTGGGTGTCCACTAGCAGCAACACTCTCACAAGGTGCAACAGTTTTAGTCCTTGAAAGAGGAGGTTCACCTTACACAAACCCCGAGCAAATAAACATAAACAACTTTGTGAATTCCCTCGCTGACATAAGCCCTTCATCATTTTCCCAGCCATTCATATCCAGGGATGGGGTCCTCAATTGCAGGGCCCGTGTCCTCGGTGGTGGCTCTGTCTTGAATGCAGGGTTCTATTCAAGGGCTGGCTCCAAGTACATAAGAGATTTTGGTTGGAATGAAACTTTGGCTAATGACTCATATGAATGGGTTGAAAAAAAAGTTGCCTTTGAGCCCTCTATGCTGCAGTGGCAATCAGCAGTGAAGAATGGTTTGCTTGAAGTTGGTGTGTGGCCTTACAATGGTTTTACTTTTGATCACTTATATGGGACTAAGGTTGGAGGGACTATTTTTGATAAGGAGGGTAACAGGCACACTTCTGCTGATTTGTTAGAGTATGCTCATCCCAAGAAGATTTCTGTTTATCTCCATGCAACTGTGCAGAAGATACTCTTTAAGTATAACACAGAAAAAGGAAGGCCACAAGCTTATGGAGTGATTTTCAAAGATGCATTAGGAGTGATGCATAGAGCATACTTGAGCACAGAAGGAAAAGGAAAGAATGAGATAATCTTATCAGGTGGTGCAATTGGAAGCCCACAGTTGCTGATGCTGAGTGGGATTGGGCCTGCTAACCATCTTCAGGCTCAAGGAATCAAAGTGGTTTTGGATCAGCCCATGGTGGGTGAAGGGATGGCAGATAATCCAATGAATGCTCTATTGGTTCCTTCCCCTGTGCCTGTTGAAGTCTCTCTGGTCCAAACAGTTGGCATCACTAAGTTTGGTAGCTTCATTGAAGCAGGCAGTGGATTGAGCTTGGGCCATTCTTGGTCTGAAAGGCTTCAAGGGATTTTTCAATTTGTGTCAAACCAGGAGAGTGTAGCAGACAGCATAAGATATTTAGCCAATCCAATTCTCAAAGGAGGAATCATAGTTGAAAAGATCATAGGACCACTGTCCACGGGTCATTTGGAGCTCATAACCACAAACCCCAATGATAACCCATCAGTTACTTTCAACTATTTTAAGGATCCAGAAGACTTAAGGAAGTGTGTTGAAGGCATGAGAACCATCATAGATGTGATAAACTCAAAAGCATTCTCAAAGTTCCGGTACTACAACATGCCGGTTCAAGCTCTAATAGACTTGATGTTGCACTTACCCTTGAACTTGAGGCCAAAACATGCTAATGCTGCATTCTCTTTAGAACAGTACTGCATAGACACTGTGCTAACAATGTGGCATTACCATGGGGGGTGCCAATCTGGTAAAGTTGTTGATCATGATTACAAGGTTATTGGGGTCGAAGCTTTGAGGGTAATTGATGGATCCACTTTTCATAGCTCACCGGGGACTAATCCTCAAGCTACTGTAATGATGCTTGGAAGGTATATGGGAGAAAAGATTATAGAGAAAAGATTCATCCATGGGCGGAAGTGA 1698 0.4293 MGWVFKQFLCAFLVWCTFLSVLSHPDEGPKYRFVREATSAPAILSYEYIVIGGGTCGCPLAATLSQGATVLVLERGGSPYTNPEQININNFVNSLADISPSSFSQPFISRDGVLNCRARVLGGGSVLNAGFYSRAGSKYIRDFGWNETLANDSYEWVEKKVAFEPSMLQWQSAVKNGLLEVGVWPYNGFTFDHLYGTKVGGTIFDKEGNRHTSADLLEYAHPKKISVYLHATVQKILFKYNTEKGRPQAYGVIFKDALGVMHRAYLSTEGKGKNEIILSGGAIGSPQLLMLSGIGPANHLQAQGIKVVLDQPMVGEGMADNPMNALLVPSPVPVEVSLVQTVGITKFGSFIEAGSGLSLGHSWSERLQGIFQFVSNQESVADSIRYLANPILKGGIIVEKIIGPLSTGHLELITTNPNDNPSVTFNYFKDPEDLRKCVEGMRTIIDVINSKAFSKFRYYNMPVQALIDLMLHLPLNLRPKHANAAFSLEQYCIDTVLTMWHYHGGCQSGKVVDHDYKVIGVEALRVIDGSTFHSSPGTNPQATVMMLGRYMGEKIIEKRFIHGRK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2218 565 Gene3D - 163 498 - -
Aed1g2218 565 SUPERFAMILY FAD-linked reductases, C-terminal domain 318 505 - -
Aed1g2218 565 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 4 559 - -
Aed1g2218 565 PIRSF Alcohol_oxidase 34 352 IPR012132 GO:0050660
Aed1g2218 565 PIRSF Alcohol_oxidase 363 563 IPR012132 GO:0050660
Aed1g2218 565 Pfam GMC oxidoreductase 46 190 IPR000172 GO:0016614|GO:0050660
Aed1g2218 565 Pfam GMC oxidoreductase 223 322 IPR000172 GO:0016614|GO:0050660
Aed1g2218 565 Gene3D - 46 548 IPR036188 -
Aed1g2218 565 SUPERFAMILY FAD/NAD(P)-binding domain 45 559 IPR036188 -
Aed1g2218 565 Pfam GMC oxidoreductase 404 549 IPR007867 GO:0016614
Aed1g2218 565 ProSitePatterns GMC oxidoreductases signature 2. 281 295 IPR000172 GO:0016614|GO:0050660
Aed1g2218 565 PANTHER OSJNBA0019K04.7 PROTEIN 4 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2218 Aed-Chr1 18482789 18485144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2218 3 564 Miscellaneous Gene Families AT5G51950 58.591 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2218 - - gmx:100780453 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2218 1 18482789 18485144 Aed1g2218 1 18482789 18485144 ECH