Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2216 ATGAATAAGGCTGTGCAATCTCTGAAATGGGTTCTCTTGGATTTGATTCAAAAGTGCAACGACTTGAGATCTTTCAAGCAAATCCATGCGCATCTATTGACTTCTGCCCTTGTTGCCAATGACTTGGTTGTCACCAAAGCTTCAAACTTTTTAGGAAAACATGTCACAGATGTTCACTACCCTTGCAATTTCCTTAAGCAATTTGATTGGAGCTTGAGCTCTTTCCCTTGCAATTTGCTTATTTCAGGGTATGCCTCTGGCCAGTTACCCTGGCTTGCAATCCTGATTTATAAATGGACTGTTAGGAATGGGTTTGTGCCTGATGTGTACACTGTCCCAGCAGTTTTGAAATCTTGTGCCAAGTTTTCTGGGATTGGAGAGGTTAGACAGTTTCATTCACTGGCTGTAAAGACTGCCTTGTGGTGTGATATTTATGTGCAAAACACTCTTGTCCATGTTTATAGCATTTGTGCGGACACGGTTGGTGCTGGCAAGGTGTTTGATGACATGCTTGTGAGAGATGTGGTCTCTTGGACTGGTTTGATATCCGGGTATGTGAAGGCTGGGTTGTTTAATGATGCTATTTCATTGTTTTTGAGAATGGATGTGGAGCCTAATGTGGCAACCTTTGTTAGCATACTCGGGGCTAGTGGGAAATTGGGTCATTTAAATCTGGGGAAGGGGATTCATGGGTTGGTTTTCAAATGTCCTTATGGGGAGGAGTTGGTGGTATGCAATGCTGTGTTGGATATGTATATGAAGTGTGAGTCTGTGACTGATGCAAGGAAAATGTTTGATGAGATACCTGCAAAGGATATTATTTCTTGGACTAGTATGATAGGTGGATTAGTGCAGTGCCAGTGTCCCAGGGAATCACTGAACTTGTTCAGTCAAATGCAGGGCTCAGGTTTTGAGCCTGATAGGGTTATACTGACTACTGTGCTTTCTGCTTGTGCCAGTCTTGGGCTTCTTGATTATGGGAGATGGGTCCATGAATACATTGATCGTCGCCATATCAAGTGGGATGTTCATATAGGAACGGCATTGGTTGACATGTATGCAAAATGTGGTTGCATAGATATGACGCAGCGTATCTTCAAGGAAATGCATTCTAAGAATATCCGCACTTGGAATGCTTATATTGGTGGTCTAGCAATAAATGGATATGGGAAGGAAGCATTGAAACGGTTTGAGGATTTGGTTGAGTCTGGTGCAAGGCCTAATGAGGTGACATTTCTAGCTGTTTTTACAGCTTGCTGCCATTCTGGTTTGGTCAATGAAGGCCGCAAGTATTTCAATGAGATGACAAGTCCCCACTTCAATCTTTCTCCCTGGTTAGAACACTATGGTTGCATGGTTGATTTGCTCTGCAGGGCTGGACTGGTGGGTGAAGCTGTGGAGATAATAAAGACAATGCCTATGCCCCCTGATGTGCAGATCCTAGGAGCTCTTTTGAGTGCCTGCAATACATATGGGAATGTGGGATTCACCCAAGAAATGTTGAAATCACTACAGAATGTTGAATTCCAAGATAGTGGCATATATGTGCTTCTTTCTAATCTGTATGCAACTAACAAGAAATGGGCTGAAGTTAGAAGTGTTAGGAGACTGATGAAGCAGAAAGGAATAAGCAAGGCTCCAGGTTCTAGCCTCATAAGGGTGGATGGTATGAGTCATGAATTTTTAGTTGGAGATAATAGCCATCCTCAAAGTGAGGATATTTACGTACTATTAAACATCCTTGCCAATCAAATCTACCTTGAGGGGCATATTAATACCCTTTCTTGA 1788 0.4256 MNKAVQSLKWVLLDLIQKCNDLRSFKQIHAHLLTSALVANDLVVTKASNFLGKHVTDVHYPCNFLKQFDWSLSSFPCNLLISGYASGQLPWLAILIYKWTVRNGFVPDVYTVPAVLKSCAKFSGIGEVRQFHSLAVKTALWCDIYVQNTLVHVYSICADTVGAGKVFDDMLVRDVVSWTGLISGYVKAGLFNDAISLFLRMDVEPNVATFVSILGASGKLGHLNLGKGIHGLVFKCPYGEELVVCNAVLDMYMKCESVTDARKMFDEIPAKDIISWTSMIGGLVQCQCPRESLNLFSQMQGSGFEPDRVILTTVLSACASLGLLDYGRWVHEYIDRRHIKWDVHIGTALVDMYAKCGCIDMTQRIFKEMHSKNIRTWNAYIGGLAINGYGKEALKRFEDLVESGARPNEVTFLAVFTACCHSGLVNEGRKYFNEMTSPHFNLSPWLEHYGCMVDLLCRAGLVGEAVEIIKTMPMPPDVQILGALLSACNTYGNVGFTQEMLKSLQNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSLIRVDGMSHEFLVGDNSHPQSEDIYVLLNILANQIYLEGHINTLS 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2216 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Aed1g2216 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Aed1g2216 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Aed1g2216 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 192 256 - -
Aed1g2216 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 191 - -
Aed1g2216 595 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 257 589 - -
Aed1g2216 595 PANTHER OS04G0488200 PROTEIN 192 256 - -
Aed1g2216 595 PANTHER OS04G0488200 PROTEIN 6 191 - -
Aed1g2216 595 PANTHER OS04G0488200 PROTEIN 257 589 - -
Aed1g2216 595 Pfam E motif 491 552 IPR046848 -
Aed1g2216 595 Gene3D Tetratricopeptide repeat domain 240 372 IPR011990 GO:0005515
Aed1g2216 595 Gene3D Tetratricopeptide repeat domain 74 235 IPR011990 GO:0005515
Aed1g2216 595 Gene3D Tetratricopeptide repeat domain 373 561 IPR011990 GO:0005515
Aed1g2216 595 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Aed1g2216 595 TIGRFAM PPR: pentatricopeptide repeat domain 176 202 IPR002885 -
Aed1g2216 595 Pfam PPR repeat 176 201 IPR002885 -
Aed1g2216 595 Pfam PPR repeat 274 304 IPR002885 -
Aed1g2216 595 Pfam PPR repeat 243 271 IPR002885 -
Aed1g2216 595 Pfam PPR repeat 448 472 IPR002885 -
Aed1g2216 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Aed1g2216 595 Pfam PPR repeat family 372 421 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2216 Aed-Chr1 18469767 18471554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2216 79 591 Glycoside Hydrolase AT3G49170 33.781 2.88e-99 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2216 - - gmx:100815155 1113.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2216 1 18469767 18471554 Aed1g2216 1 18469767 18471554 ECH