Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2053 ATGAAAAACTTCCACACAGCACTACTTATCTTCTTCATTGGGTTTGTTTCCTCAAGTCTGTTTCAAATTTCAGTTGCATCTGTTGTTTCAACAGGAGACTTCAATAAGGACTTCTTTGTGATATGGTCTCCCACCCATGTGAACACCTCTGCTGATGGACATACAAGAAGCTTGAAACTGGACCAAGAATCTGGAGCTGGTTTTGCATCAAACCAGATGTTTTTATTTGGGCAAATTGACATGCAAATCAAACTAGTGGCAGGTGATTCAGCAGGAACAGTTTTGGCCTATTATCTCACCTCTGATCAGCCTAATCGAGATGAGATAGACTTTGAGTTTCTTGGCAATGTCTCTGGGCAGCCATATATTCTACAAACAAATATTTTCGCGGATGGAACTGACAATCGAGAGGAGAGGATTTATCTGTGGTTTGATCCTACAAAGGACTTCCATACTTATTCGGTGTTGTGGAATATGCACCAGATTCCAATGAGTCTGAAAGCGACCCTGTGGAATGGTGATATCTGGGCAACAAGAGGTGGCCAAGATAAGATTGATTGGAGCAAGGCTCCCTTCAACGCTTCATTCAGAAATTACAAGATTGATGCTTGTGTGTGGAAAGGAAACCCAAGGTTATGCAGAGCAGCTAGCCCTACCAATTGGTGGAACCAATACAACTCTAGCACACTTACTTCCACACAAAGAAGGTGGCTCAAATGGGTCAGGAAATACCACATGATTTATGATTACTGCCAAGATAATAAGAGGTTCCAAAACAGTCTCCCAAGGGAATGTTCTCTTCCCAAGTATTGA 813 0.4207 MKNFHTALLIFFIGFVSSSLFQISVASVVSTGDFNKDFFVIWSPTHVNTSADGHTRSLKLDQESGAGFASNQMFLFGQIDMQIKLVAGDSAGTVLAYYLTSDQPNRDEIDFEFLGNVSGQPYILQTNIFADGTDNREERIYLWFDPTKDFHTYSVLWNMHQIPMSLKATLWNGDIWATRGGQDKIDWSKAPFNASFRNYKIDACVWKGNPRLCRAASPTNWWNQYNSSTLTSTQRRWLKWVRKYHMIYDYCQDNKRFQNSLPRECSLPKY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2053 270 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 217 265 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aed1g2053 270 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 10-RELATED 163 268 - -
Aed1g2053 270 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 18 249 IPR000757 GO:0004553|GO:0005975
Aed1g2053 270 Gene3D - 20 269 - -
Aed1g2053 270 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 10-RELATED 8 163 - -
Aed1g2053 270 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 8 163 IPR044791 GO:0004553
Aed1g2053 270 Pfam Glycosyl hydrolases family 16 35 162 IPR000757 GO:0004553|GO:0005975
Aed1g2053 270 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 268 IPR013320 -
Aed1g2053 270 PIRSF EndGlu_transf 1 162 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed1g2053 270 PIRSF EndGlu_transf 160 270 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed1g2053 270 ProSitePatterns Glycosyl hydrolases family 16 active sites. 108 118 IPR008263 GO:0004553|GO:0005975
Aed1g2053 270 CDD GH16_XET 30 265 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed1g2053 270 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 163 268 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2053 Aed-Chr1 17252460 17253934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2053 58 270 Glycoside Hydrolase AT2G14620 62.343 4.40e-110 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2053 K08235 - gmx:100783152 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2053 1 17252460 17253934 Aed1g2053 1 17252460 17253934 ECH