Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2022 ATGATGAAGGCCGCTGGAGAAGATTGCAACTTGTTTTTCATTACCATTTGCCTTTTACTGATCTCAGGTTTCTTTCTATCCTGCTTGGTAGAACCTGAGAGAGCACAGTATGGAGGAGGCATAATAGCAAATCCAGGATTTGATCACAGCATAGAGGGTTGGACAGTCTTTGGAAAAGGAGCAATCGAGGAACGAATGTCGAATGAAAGCAACAGCATTCATTCGAGGAATGTTGCCACTTTGGCCGTTACTTTTCAGAAACATTCTGAATCATTGGTTTTTCTCCCTTCCCCATATTCAGCTTGGTTTCAGGTCAGTGAAGGAAGTGACACTGTATCCGTTATATTCAAAACAAAAGGAGGTAAACTGCTACGAGGAGGCCAAGTGATAGCTGAGCATGGATGCTGGACCCTGCTAAAAGGTGGCATAGTTGCAGAGTATTCAAGTCCTGTTGAGATTCTTTTTGAGAGCAAGAATTCCGCTGTGGAAATATGGGCTGACAATATGTCCTTAAAACCATTCACTAAAAAGCAATGGAGATCACTACAAGATGCCAGCATTGAGAGGGTACGAAAGAGGAAAGTGAGATTCCAGATAACTGATGTAAATGAAACGGCATTGAAAGGAGCTACAGTCGTGGCCAAAACAGTAAAGTTGAACTTCTCAATTGGATGTGGAATGAACCATTACATCCTCACAAACAAAGACTACCAGAGTTGGTTTGTGTCAAGGTTCAAATTCGCAACCTTCACCAATGAGATGAAGTGGTATAGTACAGAGATAAAGCAAGGCGAGGAAAACTACACTATCCCAGATGCCATGATGAAATTGACCAAAGAGAATGGCATTTCTGTGAGAGGCCACAACATTTTTTGGGACAATCCAACACTACAGCCTGAATGGGTTAAGACCCTATCACCTGAGAAGTTAAGAGAAGCAGCAGCAAAAAGAATGAAATCTGTGGTTTCAAGATACAAAGGAGAACTGATTGCCTGGGATGTGATGAATGAGAATCTCCACTTTCACTTTTATGAGGACAAATTCGGTGAAAATGCCTCTGCAGAAGCATATGCAAATGCTTATGAGCTTGATCCAGAGACAAAGATGTTCCTGAATGAGTTTAACACCATTGAATATAGTGGGGATGAGGCTGCCAACCCAGCCAAGTATATCAAGAAACTTAAGGAGATTCTTTCATTTCCAGGAGTCGATGGAATGTCTGCAGCAATAGGGTTGCAAGGCCATTTTGCTAGTGGCCAGCCAAATCTTGCTTATATGAGGTCAGGTCTTGATCTTCTTGCTACAACTGGACTTCCAATTTGGCTCACAGAATTGAGTGCAGAGTACTTGGAAGAGGCTCTAAGAGAGGCGTATTCTCATCCTGGTGTTGAAGGGATTATAATGTTTTCTGGTTCAAAACAAGCTGGTTTCAATGACACTACTCTGGCAGATGAGAATTTCAAAAATACTGCAGCTGGAGACGTTGTGGACAAGCTAATTAAGGAGTGGGGAACTGGGCCTAATATTGCCACAGCAGATGACAGAGGAATTTTAGATATTTCACTGCACCATGGAGATTATGATGTAACTGTTACACATCCTCTAATCCACACCCCTATAACATTGAATTTAAGTGTAGAGAATGATTCTTCACTGGAAACCATTCATGTGAAAATGGGTGCATAA 1686 0.4181 MMKAAGEDCNLFFITICLLLISGFFLSCLVEPERAQYGGGIIANPGFDHSIEGWTVFGKGAIEERMSNESNSIHSRNVATLAVTFQKHSESLVFLPSPYSAWFQVSEGSDTVSVIFKTKGGKLLRGGQVIAEHGCWTLLKGGIVAEYSSPVEILFESKNSAVEIWADNMSLKPFTKKQWRSLQDASIERVRKRKVRFQITDVNETALKGATVVAKTVKLNFSIGCGMNHYILTNKDYQSWFVSRFKFATFTNEMKWYSTEIKQGEENYTIPDAMMKLTKENGISVRGHNIFWDNPTLQPEWVKTLSPEKLREAAAKRMKSVVSRYKGELIAWDVMNENLHFHFYEDKFGENASAEAYANAYELDPETKMFLNEFNTIEYSGDEAANPAKYIKKLKEILSFPGVDGMSAAIGLQGHFASGQPNLAYMRSGLDLLATTGLPIWLTELSAEYLEEALREAYSHPGVEGIIMFSGSKQAGFNDTTLADENFKNTAAGDVVDKLIKEWGTGPNIATADDRGILDISLHHGDYDVTVTHPLIHTPITLNLSVENDSSLETIHVKMGA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2022 561 PANTHER GLYCOSYL HYDROLASE 27 558 IPR044846 GO:0004553|GO:0005975
Aed1g2022 561 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 27 558 - -
Aed1g2022 561 SMART glyco_10 254 499 IPR001000 GO:0004553|GO:0005975
Aed1g2022 561 Pfam Glycosyl hydrolase family 10 215 448 IPR001000 GO:0004553|GO:0005975
Aed1g2022 561 Gene3D - 34 173 - -
Aed1g2022 561 SUPERFAMILY (Trans)glycosidases 207 506 IPR017853 -
Aed1g2022 561 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 213 499 IPR001000 GO:0004553|GO:0005975
Aed1g2022 561 Gene3D Glycosidases 210 506 - -
Aed1g2022 561 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2022 Aed-Chr1 17039851 17043052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2022 28 561 Glycoside Hydrolase AT4G33820 44.665 3.12e-167 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2022 - - gmx:100802367 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2022 1 17039851 17043052 Aed1g2022 1 17039851 17043052 ECH